BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17110.1
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326143 jgi|Araly1|326143|fgenesh1_pm.C_scaffold_6001363 791 0.0
Ahg893621 jgi|Araly1|893621|Al_scaffold_0006_1617 760 0.0
> Ahg326143 jgi|Araly1|326143|fgenesh1_pm.C_scaffold_6001363
Length=621
Score = 791 bits (428), Expect = 0.0
Identities = 571/636 (90%), Gaps = 26/636 (4%)
Strand=Plus/Plus
Query 1 ATGACATCGACCAACAATGAATTAAC-TGTTTCCATGATGGGTACATCGACC-A--AGGA 56
||||||||| ||||||| |||||||| || ||||| || |||||||||| || | ||||
Sbjct 1 ATGACATCGGCCAACAACGAATTAACTTG-TTCCACGACGGGTACATCGGCCAAGGAGGA 59
Query 57 GGAGGTTGTCTCTAAAGTCGACGAGGAAGACGACGATAGTAGCAGCGACAGCGATATGGA 116
|||||||||||||||||||||| ||||||||||||| | |||| | |||||||| |
Sbjct 60 GGAGGTTGTCTCTAAAGTCGACAAGGAAGACGACGA-A--AGCA--G-CAGCGATA--G- 110
Query 117 TTACGGTAGCGACAGCGAGTGGGCTGGGTATAACGT-GTTAGCGGAAACTGAACCAGAGT 175
|||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 111 CGACGGCAGCGACAGCGAGTGGGCTGGGTATAAC-TGGTTACCGGAAACTGAACCAGAGT 169
Query 176 GGGACGTCGACAGCTTTGACGGTCACGAGTTTAAAATCAATCCCAGGGTTCGTCAA-ATG 234
|||||||||| |||||||| |||||||||||||||||||| |||||||||||| || |||
Sbjct 170 GGGACGTCGATAGCTTTGATGGTCACGAGTTTAAAATCAACCCCAGGGTTCGT-AAGATG 228
Query 235 TACCGC-AGCCAGGAACTTTATGACAAATACTACAACAACAGGCTCAAGGCTTTCGAGAA 293
|| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 229 TA-TTCAAGCCAGGAACTTTATGACAAATACTACAACAACAGGCTTAAGGCTTTCGAGAG 287
Query 294 TAAGGGTTTTCTTTCTGATCATCTGAATGGAATCTATGATGTTTATCTAGACGAAAAAAT 353
||||||||| ||| | ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 288 TAAGGGTTTCCTTCCCGATCATCTGAACGGAATCTACAATGTTTATCTAGACGAAAAAAT 347
Query 354 GGATGGCTACAACAGTACTAGGGATTTCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAA 413
|||||||||||||| |||| |||||||||||| | ||||||| |||||||||||||||||
Sbjct 348 GGATGGCTACAACACTACTCGGGATTTCATGGTAAAGCTTGCCAATGTGTGTGTTAAGAA 407
Query 414 ACACAACGAGACCAAGGGAAATACTTTGGAATTGGTAAATGTTGTGAGAGCTACTGAAAG 473
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 408 ACACAACGAGACCAAGGGAACGACTTTAGAATTGGTAAATGTTGTGAGAGCTACTGAAAG 467
Query 474 GGGAGCAGCTACATGGAGGTTGTACATCACTTTTATGGCTCGAG-AGTTTCCTGATGGGC 532
||||||||||||||||||||| ||||||||||||||||||| || ||| || ||||||||
Sbjct 468 GGGAGCAGCTACATGGAGGTTTTACATCACTTTTATGGCTC-AGGAGTATCGTGATGGGC 526
Query 533 CTCTTGTTGAGTACCAAGCCAAGGTAAT-AAAGTTCTTAGGGGTCAAGGATCCTTTCCCA 591
||||||||||||||||||||||||| || ||| |||||||||| ||||| ||||||||||
Sbjct 527 CTCTTGTTGAGTACCAAGCCAAGGTTATCAAA-TTCTTAGGGGACAAGGTTCCTTTCCCA 585
Query 592 GTTCTCTGCAGAGCA-GCTCCTAAACCAGGAATCTA 626
|||||||||||| || | ||||||||||| ||||||
Sbjct 586 GTTCTCTGCAGACCAAG-TCCTAAACCAGAAATCTA 620
> Ahg893621 jgi|Araly1|893621|Al_scaffold_0006_1617
Length=621
Score = 760 bits (411), Expect = 0.0
Identities = 565/636 (89%), Gaps = 24/636 (4%)
Strand=Plus/Plus
Query 1 ATGACATCGACCAACAATGAATTAAC-TGTTTCCATGATGGGTACATCGACC-A--AGGA 56
||||||||| ||||||| |||||||| || ||||| || |||||||||| || | ||||
Sbjct 1 ATGACATCGGCCAACAACGAATTAACTTG-TTCCACGACGGGTACATCGGCCAAGGAGGA 59
Query 57 GGAGGTTGTCTCTAAAGTCGACGAGGAAGACGACGATAGTAGCAGCGACAGCGATATGGA 116
|||||||||||||||||||||| ||||||||||||| | |||| | |||||||| |
Sbjct 60 GGAGGTTGTCTCTAAAGTCGACAAGGAAGACGACGA-A--AGCA--G-CAGCGATA--G- 110
Query 117 TTACGGTAGCGACAGCGAGTGGGCTGGGTATAACGT-GTTAGCGGAAACTGAACCAGAGT 175
|||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 111 CGACGGCAGCGACAGCGAGTGGGCTGGGTATAAC-TGGTTACCGGAAACTGAACCAGAGT 169
Query 176 GGGACGTCGACAGCTTTGACGGTCACGAGTTTAAAATCAATCCCAGGGTTCGTCAA-ATG 234
|||||||||| |||||||| |||||||||||||||||||| |||||||||||| || |||
Sbjct 170 GGGACGTCGATAGCTTTGATGGTCACGAGTTTAAAATCAACCCCAGGGTTCGT-AAGATG 228
Query 235 TACCGC-AGCCAGGAACTTTATGACAAATACTACAACAACAGGCTCAAGGCTTTCGAGAA 293
|| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 229 TA-TTCAAGCCAGGAACTTTATGACAAATACTACAACAACAGGCTTAAGGCTTTCGAGAG 287
Query 294 TAAGGGTTTTCTTTCTGATCATCTGAATGGAATCTATGATGTTTATCTAGACGAAAAAAT 353
||||||||| ||| | ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 288 TAAGGGTTTCCTTCCCGATCATCTGAACGGAATCTACAATGTTTATCTAGACGAAAAAAT 347
Query 354 GGATGGCTACAACAGTACTAGGGATTTCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAA 413
|||||||||||||| |||| |||||||||||| | |||||||||||||||||||| ||||
Sbjct 348 GGATGGCTACAACACTACTCGGGATTTCATGGTAAAGCTTGCTAATGTGTGTGTTCAGAA 407
Query 414 ACACAACGAGACCAAGGGAAATACTTTGGAATTGGTAAATGTTGTGAGAGCTACTGAAAG 473
| |||||||||||||| ||| ||||||||||| |||| ||||||||||| ||||| |||
Sbjct 408 ATACAACGAGACCAAGAAAAAGACTTTGGAATTTGTAAGTGTTGTGAGAGTTACTGTAAG 467
Query 474 GGGAGCAGCTACATGGAGGTTGTACATCACTTTTATGGCTCGAGAGTTTCCTGATGGGCC 533
|||||||||| | |||||||| |||||||||||||||||||| |||| || |||||||||
Sbjct 468 GGGAGCAGCTGCGTGGAGGTTTTACATCACTTTTATGGCTCGGGAGTATCGTGATGGGCC 527
Query 534 TCTTGTTGAGTACCAAGCCAAGGTAAT-AAAGTTCTTAGGGGTCAAGGATCCTTTCCCAG 592
|||||||||||||||||||||||| || ||| ||||||||| ||||||||||||||||
Sbjct 528 TCTTGTTGAGTACCAAGCCAAGGTTATCAAA-TTCTTAGGGCAGAAGGATCCTTTCCCAG 586
Query 593 TTCTCTGCAGAGCA-GCTCCTAAACCAGGAATCTAA 627
||||||||||| || | |||||||||||||||||||
Sbjct 587 TTCTCTGCAGACCAAG-TCCTAAACCAGGAATCTAA 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22949996034
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5