BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17110.1 Length=627 Score E Sequences producing significant alignments: (Bits) Value Ahg326143 jgi|Araly1|326143|fgenesh1_pm.C_scaffold_6001363 791 0.0 Ahg893621 jgi|Araly1|893621|Al_scaffold_0006_1617 760 0.0 > Ahg326143 jgi|Araly1|326143|fgenesh1_pm.C_scaffold_6001363 Length=621 Score = 791 bits (428), Expect = 0.0 Identities = 571/636 (90%), Gaps = 26/636 (4%) Strand=Plus/Plus Query 1 ATGACATCGACCAACAATGAATTAAC-TGTTTCCATGATGGGTACATCGACC-A--AGGA 56 ||||||||| ||||||| |||||||| || ||||| || |||||||||| || | |||| Sbjct 1 ATGACATCGGCCAACAACGAATTAACTTG-TTCCACGACGGGTACATCGGCCAAGGAGGA 59 Query 57 GGAGGTTGTCTCTAAAGTCGACGAGGAAGACGACGATAGTAGCAGCGACAGCGATATGGA 116 |||||||||||||||||||||| ||||||||||||| | |||| | |||||||| | Sbjct 60 GGAGGTTGTCTCTAAAGTCGACAAGGAAGACGACGA-A--AGCA--G-CAGCGATA--G- 110 Query 117 TTACGGTAGCGACAGCGAGTGGGCTGGGTATAACGT-GTTAGCGGAAACTGAACCAGAGT 175 |||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||| Sbjct 111 CGACGGCAGCGACAGCGAGTGGGCTGGGTATAAC-TGGTTACCGGAAACTGAACCAGAGT 169 Query 176 GGGACGTCGACAGCTTTGACGGTCACGAGTTTAAAATCAATCCCAGGGTTCGTCAA-ATG 234 |||||||||| |||||||| |||||||||||||||||||| |||||||||||| || ||| Sbjct 170 GGGACGTCGATAGCTTTGATGGTCACGAGTTTAAAATCAACCCCAGGGTTCGT-AAGATG 228 Query 235 TACCGC-AGCCAGGAACTTTATGACAAATACTACAACAACAGGCTCAAGGCTTTCGAGAA 293 || | |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 229 TA-TTCAAGCCAGGAACTTTATGACAAATACTACAACAACAGGCTTAAGGCTTTCGAGAG 287 Query 294 TAAGGGTTTTCTTTCTGATCATCTGAATGGAATCTATGATGTTTATCTAGACGAAAAAAT 353 ||||||||| ||| | ||||||||||| |||||||| |||||||||||||||||||||| Sbjct 288 TAAGGGTTTCCTTCCCGATCATCTGAACGGAATCTACAATGTTTATCTAGACGAAAAAAT 347 Query 354 GGATGGCTACAACAGTACTAGGGATTTCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAA 413 |||||||||||||| |||| |||||||||||| | ||||||| ||||||||||||||||| Sbjct 348 GGATGGCTACAACACTACTCGGGATTTCATGGTAAAGCTTGCCAATGTGTGTGTTAAGAA 407 Query 414 ACACAACGAGACCAAGGGAAATACTTTGGAATTGGTAAATGTTGTGAGAGCTACTGAAAG 473 |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 408 ACACAACGAGACCAAGGGAACGACTTTAGAATTGGTAAATGTTGTGAGAGCTACTGAAAG 467 Query 474 GGGAGCAGCTACATGGAGGTTGTACATCACTTTTATGGCTCGAG-AGTTTCCTGATGGGC 532 ||||||||||||||||||||| ||||||||||||||||||| || ||| || |||||||| Sbjct 468 GGGAGCAGCTACATGGAGGTTTTACATCACTTTTATGGCTC-AGGAGTATCGTGATGGGC 526 Query 533 CTCTTGTTGAGTACCAAGCCAAGGTAAT-AAAGTTCTTAGGGGTCAAGGATCCTTTCCCA 591 ||||||||||||||||||||||||| || ||| |||||||||| ||||| |||||||||| Sbjct 527 CTCTTGTTGAGTACCAAGCCAAGGTTATCAAA-TTCTTAGGGGACAAGGTTCCTTTCCCA 585 Query 592 GTTCTCTGCAGAGCA-GCTCCTAAACCAGGAATCTA 626 |||||||||||| || | ||||||||||| |||||| Sbjct 586 GTTCTCTGCAGACCAAG-TCCTAAACCAGAAATCTA 620 > Ahg893621 jgi|Araly1|893621|Al_scaffold_0006_1617 Length=621 Score = 760 bits (411), Expect = 0.0 Identities = 565/636 (89%), Gaps = 24/636 (4%) Strand=Plus/Plus Query 1 ATGACATCGACCAACAATGAATTAAC-TGTTTCCATGATGGGTACATCGACC-A--AGGA 56 ||||||||| ||||||| |||||||| || ||||| || |||||||||| || | |||| Sbjct 1 ATGACATCGGCCAACAACGAATTAACTTG-TTCCACGACGGGTACATCGGCCAAGGAGGA 59 Query 57 GGAGGTTGTCTCTAAAGTCGACGAGGAAGACGACGATAGTAGCAGCGACAGCGATATGGA 116 |||||||||||||||||||||| ||||||||||||| | |||| | |||||||| | Sbjct 60 GGAGGTTGTCTCTAAAGTCGACAAGGAAGACGACGA-A--AGCA--G-CAGCGATA--G- 110 Query 117 TTACGGTAGCGACAGCGAGTGGGCTGGGTATAACGT-GTTAGCGGAAACTGAACCAGAGT 175 |||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||| Sbjct 111 CGACGGCAGCGACAGCGAGTGGGCTGGGTATAAC-TGGTTACCGGAAACTGAACCAGAGT 169 Query 176 GGGACGTCGACAGCTTTGACGGTCACGAGTTTAAAATCAATCCCAGGGTTCGTCAA-ATG 234 |||||||||| |||||||| |||||||||||||||||||| |||||||||||| || ||| Sbjct 170 GGGACGTCGATAGCTTTGATGGTCACGAGTTTAAAATCAACCCCAGGGTTCGT-AAGATG 228 Query 235 TACCGC-AGCCAGGAACTTTATGACAAATACTACAACAACAGGCTCAAGGCTTTCGAGAA 293 || | |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 229 TA-TTCAAGCCAGGAACTTTATGACAAATACTACAACAACAGGCTTAAGGCTTTCGAGAG 287 Query 294 TAAGGGTTTTCTTTCTGATCATCTGAATGGAATCTATGATGTTTATCTAGACGAAAAAAT 353 ||||||||| ||| | ||||||||||| |||||||| |||||||||||||||||||||| Sbjct 288 TAAGGGTTTCCTTCCCGATCATCTGAACGGAATCTACAATGTTTATCTAGACGAAAAAAT 347 Query 354 GGATGGCTACAACAGTACTAGGGATTTCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAA 413 |||||||||||||| |||| |||||||||||| | |||||||||||||||||||| |||| Sbjct 348 GGATGGCTACAACACTACTCGGGATTTCATGGTAAAGCTTGCTAATGTGTGTGTTCAGAA 407 Query 414 ACACAACGAGACCAAGGGAAATACTTTGGAATTGGTAAATGTTGTGAGAGCTACTGAAAG 473 | |||||||||||||| ||| ||||||||||| |||| ||||||||||| ||||| ||| Sbjct 408 ATACAACGAGACCAAGAAAAAGACTTTGGAATTTGTAAGTGTTGTGAGAGTTACTGTAAG 467 Query 474 GGGAGCAGCTACATGGAGGTTGTACATCACTTTTATGGCTCGAGAGTTTCCTGATGGGCC 533 |||||||||| | |||||||| |||||||||||||||||||| |||| || ||||||||| Sbjct 468 GGGAGCAGCTGCGTGGAGGTTTTACATCACTTTTATGGCTCGGGAGTATCGTGATGGGCC 527 Query 534 TCTTGTTGAGTACCAAGCCAAGGTAAT-AAAGTTCTTAGGGGTCAAGGATCCTTTCCCAG 592 |||||||||||||||||||||||| || ||| ||||||||| |||||||||||||||| Sbjct 528 TCTTGTTGAGTACCAAGCCAAGGTTATCAAA-TTCTTAGGGCAGAAGGATCCTTTCCCAG 586 Query 593 TTCTCTGCAGAGCA-GCTCCTAAACCAGGAATCTAA 627 ||||||||||| || | ||||||||||||||||||| Sbjct 587 TTCTCTGCAGACCAAG-TCCTAAACCAGGAATCTAA 621 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22949996034 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5