BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G17130.1

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488572 jgi|Araly1|488572|fgenesh2_kg.6__1706__AT5G17130.1         592    8e-169


> Ahg488572 jgi|Araly1|488572|fgenesh2_kg.6__1706__AT5G17130.1
Length=365

 Score =  592 bits (320),  Expect = 8e-169
 Identities = 351/366 (96%), Gaps = 2/366 (1%)
 Strand=Plus/Plus

Query  1    ATGGAAGACTACAATGGTGGTTTT-GGTGGCATTGGAACCGGGGGAGGGAAAGGCAAAGG  59
            |||||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||
Sbjct  1    ATGGAAGACTACAATGAT-GTTTTCGGTGGCATTGGAACCGGAGGAGGGAAAGGCAAAGG  59

Query  60   AAAAAATATACCAAACCAACGCAAGCTAGATGTTGAAGCTCAACGTGAACAAGCGAAGAA  119
             |||||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||
Sbjct  60   GAAAAATATACCAAACCAATGCAAACTGGATGTTGAAGCTCGACGTGAACAAGCGAAGAA  119

Query  120  AACACAACAAGATGGTGAAAGAGCAGAATCAGTCGAGGAATTTCCAATTCCAAAAGATTA  179
            ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct  120  AACACAACAAGCTGGTGAAAGAGCAGAATCAGTCGAAGAATTTCCAATTCCAGAAGATTA  179

Query  180  TGGGGATGGTAGTCGTATCGATTTCTGTTGGACTCGTACACATAAGCATTTGCTACAGAG  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  180  TGGGGATGGTAGTCGTATCGATTTCTGTTGGACTCGTACACATAAGCATTTGCTACAAAG  239

Query  240  AATTGTAGAGCAAAAAGAAGACGATTGTTGGGCTTGGGCTCTAGTTAGAATCTTGCAATT  299
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct  240  AATTGTAGAGCAAAAAGAAGACGACTGTTGGGCTTGGGCTCTAGTTAGAATCTTACAATT  299

Query  300  TTACTACAACATGAACATTACCGCAATTGCTGAGCAGAAGACCTTATCAATCAAATCACT  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TTACTACAACATGAACATTACCGCAATTGCTGAGCAGAAGACCTTATCAATCAAATCACT  359

Query  360  TGTCAA  365
            ||||||
Sbjct  360  TGTCAA  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13278144972


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5