BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G17140.1

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488573 jgi|Araly1|488573|fgenesh2_kg.6__1707__AT5G17140.1         442    8e-124


> Ahg488573 jgi|Araly1|488573|fgenesh2_kg.6__1707__AT5G17140.1
Length=333

 Score =  442 bits (239),  Expect = 8e-124
 Identities = 307/339 (91%), Gaps = 7/339 (2%)
 Strand=Plus/Plus

Query  2    TGTATAAAATAAAGGCAAGTTTTATTACCAAACCCAACGCGACTCCGGA-GGAAATCCGA  60
            |||| ||||| |||||||| ||||| || |||||| ||||||||||||| ||||||||||
Sbjct  1    TGTACAAAATCAAGGCAAGCTTTATCACTAAACCCGACGCGACTCCGGATGGAAATCCGA  60

Query  61   GGATTACTACTCACTCAAGGTCCTATTGGTATAAGTGTTGATTTATGTGGAATATTTCGT  120
            ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||
Sbjct  61   GGATTACTACTCACTCAAGGTCCTATTGGTATAAGTGTTAATGTATGCGGAATATTTGGT  120

Query  121  CAAGTTTATGAGTTCAAGGGGATCTATGTTCTGCCTGAACCAAAAGAAAATATGGAAAGG  180
            |  | |  |||  |  ||| ||||||| || |||||||||| |||||||||||| |||| 
Sbjct  121  C--G-TGCTGA--T-GAGGAGATCTATATTTTGCCTGAACCGAAAGAAAATATGAAAAGA  174

Query  181  CACGCTTTGATCATTGTGGGTTTTGGTACAACAAAAGATAGCAAATTGTTTTTCATTGTC  240
            || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  175  CATGCTTTGATCATTGTGGGTTTTGGTACAACAAAAGATGGCAAATTGTTTTTCATTGTC  234

Query  241  CAAAACACGTGGGGGACAAAATGGGGATTCAACGGATATGCAAGAATTATCATCAAAAAG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  235  CAAAACACGTGGGGGACAAAATGGGGATTCAACGGATATGCAAGAATTATCATCAAAAAG  294

Query  301  ACTTGTCCTATCTTTTACGTGAGTGAATTGGTTAACTAA  339
            ||||||||||| ||| |||||||||  ||||||||||||
Sbjct  295  ACTTGTCCTATATTTGACGTGAGTGGTTTGGTTAACTAA  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12019010535


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5