BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17150.1 Length=835 Score E Sequences producing significant alignments: (Bits) Value Ahg488575 jgi|Araly1|488575|fgenesh2_kg.6__1709__AT5G17120.1 326 2e-88 > Ahg488575 jgi|Araly1|488575|fgenesh2_kg.6__1709__AT5G17120.1 Length=468 Score = 326 bits (176), Expect = 2e-88 Identities = 204/218 (94%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391 AAATTAAACGATGAGAAGGGACAGACTGTGGAATTGGTAGAGATTGTCAGAGTTATTGAC 450 |||||||||||||| |||||| | ||||||||||||||||||||||| |||| |||||| Sbjct 250 AAATTAAACGATGAAAAGGGAAATACTGTGGAATTGGTAGAGATTGTGAGAGCTATTGAA 309 Query 451 TCAGGAGGATTTAGATGGTATTCATATATAACGTTTATGGCTCGAGAGTATCCTAATGGA 510 ||||||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||| Sbjct 310 TCAGGAGGAGCTAGATGGAATTCTTATATAACGTTTATGGCTCGAGAGTATTCTAATGGA 369 Query 511 CCTCTTGTGGAGTACCAAGCCAAAGTCATGAACTATGCAGGAAACGAGAAACCTCCTTTC 570 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 370 CCTCTTGTTGAGTACCAAGCCAAAGTCATGAACTATGCAGGAAACGAGAAACCTCCTTTC 429 Query 571 CCGATACTTTGCAGACCAAGTCCTAAACTCTCTGTTTA 608 || || |||||||||||||||||||||||||||||||| Sbjct 430 CCTATTCTTTGCAGACCAAGTCCTAAACTCTCTGTTTA 467 Score = 274 bits (148), Expect = 8e-73 Identities = 221/254 (87%), Gaps = 14/254 (6%) Strand=Plus/Plus Query 1 ATGGCTCCTGAATCGACGGTGAAACAAGCTTCGACGACGGATATGGTGAATTCTTCTCTA 60 ||||||||||||||||||| | ||||||||||| |||||||||||||||| || || || Sbjct 1 ATGGCTCCTGAATCGACGGCGGAACAAGCTTCGGCGACGGATATGGTGAACTCATCGCTC 60 Query 61 ATGGAAGAGCACAAAGTCGAAGAGGAAGAAGAAGACGGAGGCAGTGATATCGACAGAAGG 120 ||||||||||||||||||||||| | |||| | | | || ||||||||||||||| Sbjct 61 ATGGAAGAGCACAAAGTCGAAGA-G--GAAG--G-C--A-GC---GATATCGACAGAAGG 108 Query 121 TATAAATACGTGCCAGGACCAGAACCGGAGTGGGATGTGGACAGCTACGATGGTCGTGAA 180 ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 109 TATAAATACGTGCTAGGACCAGAACCGGAGTGGGATTTGGACAGCTACGATGGTCGTGAA 168 Query 181 TACGAATCCGATCCTGAAGATCGTCAAATTTTCTCCGATGAGGATGAGTAT-AATGAATA 239 || ||||||||||| ||||||||||| |||||||||| || || || ||| || |||| Sbjct 169 TATGAATCCGATCCCGAAGATCGTCAGTTTTTCTCCGACGAAGACGATTATCAA-GAATT 227 Query 240 CCGTATCCGCAAGC 253 ||||||||||||| Sbjct 228 TCGTATCCGCAAGC 241 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30879562770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5