BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G17150.1

Length=835
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488575 jgi|Araly1|488575|fgenesh2_kg.6__1709__AT5G17120.1         326    2e-88


> Ahg488575 jgi|Araly1|488575|fgenesh2_kg.6__1709__AT5G17120.1
Length=468

 Score =  326 bits (176),  Expect = 2e-88
 Identities = 204/218 (94%), Gaps = 0/218 (0%)
 Strand=Plus/Plus

Query  391  AAATTAAACGATGAGAAGGGACAGACTGTGGAATTGGTAGAGATTGTCAGAGTTATTGAC  450
            |||||||||||||| |||||| | ||||||||||||||||||||||| |||| |||||| 
Sbjct  250  AAATTAAACGATGAAAAGGGAAATACTGTGGAATTGGTAGAGATTGTGAGAGCTATTGAA  309

Query  451  TCAGGAGGATTTAGATGGTATTCATATATAACGTTTATGGCTCGAGAGTATCCTAATGGA  510
            |||||||||  ||||||| |||| ||||||||||||||||||||||||||| ||||||||
Sbjct  310  TCAGGAGGAGCTAGATGGAATTCTTATATAACGTTTATGGCTCGAGAGTATTCTAATGGA  369

Query  511  CCTCTTGTGGAGTACCAAGCCAAAGTCATGAACTATGCAGGAAACGAGAAACCTCCTTTC  570
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  370  CCTCTTGTTGAGTACCAAGCCAAAGTCATGAACTATGCAGGAAACGAGAAACCTCCTTTC  429

Query  571  CCGATACTTTGCAGACCAAGTCCTAAACTCTCTGTTTA  608
            || || ||||||||||||||||||||||||||||||||
Sbjct  430  CCTATTCTTTGCAGACCAAGTCCTAAACTCTCTGTTTA  467


 Score =  274 bits (148),  Expect = 8e-73
 Identities = 221/254 (87%), Gaps = 14/254 (6%)
 Strand=Plus/Plus

Query  1    ATGGCTCCTGAATCGACGGTGAAACAAGCTTCGACGACGGATATGGTGAATTCTTCTCTA  60
            ||||||||||||||||||| | ||||||||||| |||||||||||||||| || || || 
Sbjct  1    ATGGCTCCTGAATCGACGGCGGAACAAGCTTCGGCGACGGATATGGTGAACTCATCGCTC  60

Query  61   ATGGAAGAGCACAAAGTCGAAGAGGAAGAAGAAGACGGAGGCAGTGATATCGACAGAAGG  120
            ||||||||||||||||||||||| |  ||||  | |  | ||   |||||||||||||||
Sbjct  61   ATGGAAGAGCACAAAGTCGAAGA-G--GAAG--G-C--A-GC---GATATCGACAGAAGG  108

Query  121  TATAAATACGTGCCAGGACCAGAACCGGAGTGGGATGTGGACAGCTACGATGGTCGTGAA  180
            ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  109  TATAAATACGTGCTAGGACCAGAACCGGAGTGGGATTTGGACAGCTACGATGGTCGTGAA  168

Query  181  TACGAATCCGATCCTGAAGATCGTCAAATTTTCTCCGATGAGGATGAGTAT-AATGAATA  239
            || ||||||||||| |||||||||||  |||||||||| || || || ||| || |||| 
Sbjct  169  TATGAATCCGATCCCGAAGATCGTCAGTTTTTCTCCGACGAAGACGATTATCAA-GAATT  227

Query  240  CCGTATCCGCAAGC  253
             |||||||||||||
Sbjct  228  TCGTATCCGCAAGC  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30879562770


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5