BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17160.1
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488576 jgi|Araly1|488576|fgenesh2_kg.6__1710__AT5G17160.1 2584 0.0
Ahg477561 jgi|Araly1|477561|fgenesh2_kg.3__262__AT3G03130.1 209 5e-53
> Ahg488576 jgi|Araly1|488576|fgenesh2_kg.6__1710__AT5G17160.1
Length=1951
Score = 2584 bits (1399), Expect = 0.0
Identities = 1729/1882 (92%), Gaps = 47/1882 (2%)
Strand=Plus/Plus
Query 6 AAAAAACATCTTGTTTtctctgccaatc-tcaatttctctcccaaccagaaaattctctc 64
|||||||||||||||||||||||||| | ||||| ||||||||||||| ||||| ||||
Sbjct 1 AAAAAACATCTTGTTTTCTCTGCCAA-CTTCAATCTCTCTCCCAACCA-CAAATT-TCTC 57
Query 65 actctctctcGATTTCGCGGAAATGGATTTCCACAGCCTTTTGAGAAGGGATCTTCAATT 124
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 58 A--CTCTCTCGATTTCGCGGAAATGGATTTCCACAGCCTTTTGAGAAGAGATCTTCAATT 115
Query 125 TCTCTGCAAGAGGAACAAAATCCCAGCTAATATGACCAATATCGCCATGGCTGATGCTCT 184
||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||||
Sbjct 116 TCTCTGCAAGAGGAACAAAATCCCAGCCAATATGACCAACCTTGCCATGGCCGATGCTCT 175
Query 185 CAAATCTCTTGAGATTGTTGATGGTCTTGATGAATACATGAATCAATCTGAATCCAGTGC 244
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 176 CAAATCTCTTGAGATTGTTGATGGTCTTGATGAATACATGAATCAATCCGAATCCAATGC 235
Query 245 TCCGCATTCTCCAACCAGTGTAGCAAAGCTGCCACCAAGCACTGCAACTAGAACAACTCG 304
|| ||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 236 TCAGCAGTCTCCAACCAGTGTAGCAAAGCTGCCACCAAATACTGCAGCTAGAACAACTCG 295
Query 305 ACGGAAGACCACAACAAAAGCTGAGCCTCAGCCATCATCTCAGTTGGTGTCCCGTTCTTG 364
| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 296 AAGAAAGACCACAACAAAAGCTGAGCCTCAGTCATCATCTCAGTTGGTGTCCCGTTCTTG 355
Query 365 TCGTTCGACGAGCAAGTCTCTTGCTGGAGATATGGACCAGGAAAACATAAACAAGAATGT 424
|||| ||||||||||||||||||||||||| ||||||||||| |||||||| |||| |||
Sbjct 356 TCGTGCGACGAGCAAGTCTCTTGCTGGAGAAATGGACCAGGATAACATAAAGAAGAGTGT 415
Query 425 TGCTCAAGAAATGAAGACTAGCAATGTCAAGTTTGAAGCCAATGTGCTCAAAACTCCAGC 484
|||||||||| |||||||| || ||||| ||||||||||||||||| ||||||||| ||
Sbjct 416 TGCTCAAGAACCGAAGACTAACACTGTCAGGTTTGAAGCCAATGTGCCCAAAACTCCTGC 475
Query 485 AGCAGGAAGCACAAGGAAAACTTCAGCAGCAACTTCTTGCACTAAGAAGGATGAATTGGT 544
|||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 476 AGCACGAAGCACAAGGAAAGCTTCAGCAGCAACTTCTTGTAGTAAGAAGGATGAATTGGT 535
Query 545 CCAGTCGGTCTACAGCACTAGGAGATCAACCAGGCTGTTAGAGAAATGTATGGCCGATCT 604
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 536 CCAGTCGGTCTACAGCACTAGGAGATCAACAAGGCTGTTAGAAAAATGTATGGCTGATCT 595
Query 605 GAGTTTGAAGACTAAAGAAA-CTGTGGATAATAAACCTGCCAAGAATGAAGATACAGAAC 663
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 596 GAGTTTGAAGACTAAAGAAACCT-TGGATAATAAACCTGCCAAGAATGAAGATACAGAAC 654
Query 664 AGAAA-GTATCTGCACAGGAGAAGAATCTAACTGGTTCAGAGGGTGAAGTTATCCCAGGT 722
| ||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 655 A-AAATGTATCTGCAAAGGAGAAGAATCCAGCTGGTTCAGAGGGTGAAGTTATCCCAGGT 713
Query 723 AGAGATTTAAGTGTTTCCATGGAACAAGTATGGGAGAACTTGAAGAATGACAGTGACAAG 782
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 714 AGAGATTTAAGTGTTTCCATGGAACAAGTATGGGAGAACTTGAAGAATGACACTGACCAG 773
Query 783 ATAGCTGGAGATCTTGAGGTAATTGTTGTTATGGATGCAAACACGGAGGCCAACAAGGAA 842
||| ||||||||||| | ||| ||||||||||| || ||| ||||||||||
Sbjct 774 GTAGTTGGAGATCTTGC--T----GTT---ATGGATGCAAATACTGAGACCAACAAGGA- 823
Query 843 GA-GATGAATGAAGTTACGGCTGAT-AAAAAGGAATCTGAGAATAGCTTAGTCCAAG-TA 899
|| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |
Sbjct 824 GAAGATGAATGAAGTTTTGGCTGATGAAAAAG-AATCTGAGAATAGCTTAGTCCAAGCT- 881
Query 900 GACAAAGAAGAAGAAACGTTGCAGGCCATCTGTGAGGAAGGTCCGAAGAAGAATGACAAT 959
|||||| |||||||||| ||||| || |||||||||||||| ||||||||||||||||||
Sbjct 882 GACAAACAAGAAGAAACATTGCATGCTATCTGTGAGGAAGGCCCGAAGAAGAATGACAAT 941
Query 960 GATCAGGAGATTGGAGATCTTGTGATATATGTTGATGTTAGTGATATTCCTCTCTTGGAA 1019
|| |||||||||| |||||||| ||| ||||||||| || | |||||||| ||||||||
Sbjct 942 GACCAGGAGATTGAAGATCTTGAGATTTATGTTGATCTT-G--ATATTCCTGTCTTGGAA 998
Query 1020 TCTGCAATCACTGAGACACACAATGATGATAATGAGTCCAAGAACGTTCTAGCTATT-GA 1078
|||| || ||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 999 TCTGGAAACACTGAGACACACAATGATGATAATGAGTCCAAGAACGTTCTAACT-TTCGA 1057
Query 1079 TAGGTC-AGTAGACCAACAAGAAACAGAACATGCAATTCAGGAGAATGATGCTGAGCCAG 1137
||| || |||||||||||||||||||||||||||||| |||||||||||| ||||||| |
Sbjct 1058 TAG-TCCAGTAGACCAACAAGAAACAGAACATGCAATCCAGGAGAATGATTCTGAGCCTG 1116
Query 1138 AGACAAAGGTGAACCAAACCGATAGTGATGCTGGTGATTCAAAAACCAAACAGGCAATTC 1197
||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1117 AGACAAAGGTGGACCAAACTGATAGTGATGCTGGTGATTCAAAGCCCAAACAGGCAATTC 1176
Query 1198 AGGAGAATGACTCTGAACCTGAGAAGATCAACAATTTTGATGAAGAGACAATGGTGGACC 1257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1177 AGGAGAATGACTCTGAACCTGAGAAGATCAACAATTTTGATGAAGACACAATGGTGGACC 1236
Query 1258 AAACCGACAGTGATTC--------C-GAAACAGAACCGGAAGAAAATCATTCTGGTGTTG 1308
|||||||||||||| | | |||||||||||||||||| |||||||||||||||
Sbjct 1237 AAACCGACAGTGATGCTGGTGATTCAGAAACAGAACCGGAAGAAGATCATTCTGGTGTTG 1296
Query 1309 ACTCAGACGGCACTATCTCTGAAGCTGATTCGAACCAAGCCGTAGTGGGATCTGATATTG 1368
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 1297 ACTCAGACGGCACTATCTCTGAAGCTGATTCGAACCAAGCCGTATTGGGATCTGAGACTG 1356
Query 1369 CGGATGAAGAGATGACTCTTTCGGGATCAGAAGGCTCTGCTGCTACTGCTCCAAATTCAC 1428
| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1357 CTGATGAAGAGATGACACTTTCGGAATCAGAAGGCTCTGCTGCTACTGCTCCAAATTCAC 1416
Query 1429 CTCCTCGTCTTGAAGAGGCTAAAGTCATCAAAACAACTCTGGTATCTCCATTTGCAGTAG 1488
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1417 CTCCTCTTCTTGAAGAGGCTAAAGTCATCAAAACAACTCCGGTATCTCCATTTGCAGCAG 1476
Query 1489 AATCAATCTCAACTCAATTCCCAAGACCAAGCAAATCAACAACTCCATTAAAGAACTCGC 1548
|| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 AACCAATCTCAGTTCAGTTCCCAAGACCAAGCAAATCAACAACTCCATTAAAGAACTCGG 1536
Query 1549 CTCTGAAGCTGGTCAATGAGAACAAGGAGAACAACATGGAGATGATGATGATGAATGTTA 1608
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1537 CTCTGAAGCTGGTCAATGAGAACAAGGAGAACAACATGGAGGTGATGATGATGAACGTTA 1596
Query 1609 ACAACAATGAGAATGGAGAGAGCAAAGGCGAGGAGGGTAAGAAGAAGAAGAAGGTGACAA 1668
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1597 ACAACAATGAGAATGGAGAGAGCAAAGGCGAGGAAGGTAAGAAGAAGAAGAAGGTGACAA 1656
Query 1669 TCGATGAAGAGAACTTGAAAAATACGAGCATAAGGCAACTGGAGAA-GATGGTGAAGGAA 1727
|||||||||||||||||||| | ||||| | ||||||||| |||| |||||||||||||
Sbjct 1657 TCGATGAAGAGAACTTGAAAGTTGCGAGCGTGAGGCAACTG-AGAAAGATGGTGAAGGAA 1715
Query 1728 CTTTCTATAAAGACCAGTAACAGAACTGCGTTGCAGGTATTGCCTGGGAATAATAAGACT 1787
|| || ||||| | |||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1716 CTCTCAATAAAAAGCAGTAACAGAACTGCGTTGCAGATATTGCCTGGGAATAATCAGACT 1775
Query 1788 GCAGAGTAGCGAG-G-GAGACTCAAATGTGCTTTGTCTTTCTTTTGTTGTTCTTCTTGTT 1845
||||||||| ||| | ||| | |||||||||||||| |||||||||||||| ||||||||
Sbjct 1776 GCAGAGTAGAGAGTGTGAG-C-CAAATGTGCTTTGTTTTTCTTTTGTTGTTGTTCTTGTT 1833
Query 1846 GTCTCAGACAGATAAACAAAAA 1867
|||||||||||||||| |||||
Sbjct 1834 GTCTCAGACAGATAAAAAAAAA 1855
Score = 87.9 bits (47), Expect = 3e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1936 CAATGTGTTGATTTTATTACAAAATAATAAGCTCAAAATACTCTTTTAAGTTC 1988
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1898 CAATCTGTTGATTTCATTACAAAATAATAAGCTCAAAATACTCTTTTAAGTTC 1950
> Ahg477561 jgi|Araly1|477561|fgenesh2_kg.3__262__AT3G03130.1
Length=1737
Score = 209 bits (113), Expect = 5e-53
Identities = 282/359 (79%), Gaps = 29/359 (8%)
Strand=Plus/Plus
Query 87 ATGGATTTCCACAGCCTTTTGAGAAGGGATCTTCAATTTCTCTGCAAGAGGAACAAAATC 146
|||||||||||| | ||| |||||| |||||||||||| |||| ||||| |||||||||
Sbjct 80 ATGGATTTCCACTGTCTTCCGAGAAGAGATCTTCAATTTTTCTGTAAGAGAAACAAAATC 139
Query 147 CCAGCTAATATGACCAATATCGCCATGGCTGATGCTCTCAAATCTCTTGAGATTGTTGAT 206
||||| |||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 140 CCAGCCAATATGACCAATATCGCCATGGCTGATGCTCTCAGAGATCTTGAGATTGTGGAA 199
Query 207 GGTCTTGATGAATACATGAATCAATCTGAATCCAGTGCTCCGCATTCTCCAACCAGTGTA 266
||| | ||||| | |||| ||| |||| | ||| || | |||||||||||||||
Sbjct 200 GGTATGGATGAGTTCATGGATCCATCT----C--GTGA-CC--AGTCTCCAACCAGTGTA 250
Query 267 GC-A-AAGCT-GCCA----C--CAAGCACTGCAACTAGAACAACTCGACGGAAGACCACA 317
|| | || | |||| | | | |||||| |||||||||||||| ||||||||||
Sbjct 251 GCTAGAAATTTGCCAAGTGCTGCTCGTACTGCAGCTAGAACAACTCGAAGGAAGACCACG 310
Query 318 ACAAAAGCTGAGCCTCAGCCATCATCTCAGTTGGTGTCCCGTTCTTGTCGT-TCGACGAG 376
| || | ||| ||||| ||||| | |||||| ||||||||||| | | | |||
Sbjct 311 A-AAGA--TGAAACTCAGTCATCAGA--A-TTGGTGACCCGTTCTTGTTATGTGGT-GAG 363
Query 377 CAAGTCTCTT-GCTGGAGATATGGACCAGGAAAACATAAACAAGAATGTTGCTCAAGAA 434
|||||| ||| |||||||| ||||| || ||||||| ||||| |||| | |||| ||||
Sbjct 364 CAAGTC-CTTAGCTGGAGAAATGGATCAAGAAAACAAAAACATGAATAT-GCTCCAGAA 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74923511915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5