BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17165.1 Length=457 Score E Sequences producing significant alignments: (Bits) Value Ahg941221 jgi|Araly1|941221|scaffold_601765.1 501 2e-141 > Ahg941221 jgi|Araly1|941221|scaffold_601765.1 Length=409 Score = 501 bits (271), Expect = 2e-141 Identities = 366/410 (89%), Gaps = 14/410 (3%) Strand=Plus/Plus Query 57 AATA-TTGTGTACAGAAATAGAGTTAATGGCAGCCAAATCGAAGAACATTCAGGTGGTCG 115 |||| ||| ||||||||| |||||||||||||||||||||||||| | |||||||| ||| Sbjct 1 AATATTTG-GTACAGAAACAGAGTTAATGGCAGCCAAATCGAAGAGCGTTCAGGTGATCG 59 Query 116 GGAGGCACATAGTCAACGGCGTTCGTTCACG----------C--GCCGTCGCATATGGTC 163 ||| ||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 60 GGAAGCACATAGTCAACGGCGTTCGTTCACGCTCTTTCTCACGTGCCGTCGCATATGGTC 119 Query 164 TCTTCACGTCTCGGAATGATCACACGTCTGCGTATGATAAGAACGTCGAGGAAGAATTGC 223 |||||| |||||||||| ||||||| || | ||||||||||||||| ||||||||||||| Sbjct 120 TCTTCAAGTCTCGGAATAATCACACATCGGGGTATGATAAGAACGTAGAGGAAGAATTGC 179 Query 224 AACCGAGTCAAGTGCCTGATGAAATGATAAAGCCTGACTCTGACAAATATTGGTCTCCTC 283 | ||||| ||||||| |||||| |||||||||| |||||||||||||| |||||||| | Sbjct 180 AGTCGAGTAAAGTGCCGGATGAATTGATAAAGCCCGACTCTGACAAATACTGGTCTCCCC 239 Query 284 ATCCCCAAACCGGTGTCTTTGGACCTTCCTCCTCCTCGACCAACGCAAAGGACGAATTTC 343 |||| |||||||||||||||||||||||||||||||||||| || |||| ||||| |||| Sbjct 240 ATCCTCAAACCGGTGTCTTTGGACCTTCCTCCTCCTCGACCGACACAAATGACGATTTTC 299 Query 344 GCGGCGGTCAGGAGGACTCAGTGATGGAGGAGAAAGCCTGGTTCCGTCCAACAAGTCTCG 403 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 300 GCGGCGGCCAGGAGGACTCAGTGATGGAGGAGAAAGCTTGGTTCCGTCCAACAAGTCTCG 359 Query 404 AAGATTTGGACAAGACTCACCATTCGTAGCAAACAAACTCTTCCTTTTAT 453 | ||||||||||||||||||||||| |||||||||||||||| || |||| Sbjct 360 AGGATTTGGACAAGACTCACCATTCATAGCAAACAAACTCTTTCTATTAT 409 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16521370037 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5