BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G17165.1

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941221 jgi|Araly1|941221|scaffold_601765.1                        501    2e-141


> Ahg941221 jgi|Araly1|941221|scaffold_601765.1
Length=409

 Score =  501 bits (271),  Expect = 2e-141
 Identities = 366/410 (89%), Gaps = 14/410 (3%)
 Strand=Plus/Plus

Query  57   AATA-TTGTGTACAGAAATAGAGTTAATGGCAGCCAAATCGAAGAACATTCAGGTGGTCG  115
            |||| ||| ||||||||| |||||||||||||||||||||||||| | |||||||| |||
Sbjct  1    AATATTTG-GTACAGAAACAGAGTTAATGGCAGCCAAATCGAAGAGCGTTCAGGTGATCG  59

Query  116  GGAGGCACATAGTCAACGGCGTTCGTTCACG----------C--GCCGTCGCATATGGTC  163
            ||| |||||||||||||||||||||||||||          |  ||||||||||||||||
Sbjct  60   GGAAGCACATAGTCAACGGCGTTCGTTCACGCTCTTTCTCACGTGCCGTCGCATATGGTC  119

Query  164  TCTTCACGTCTCGGAATGATCACACGTCTGCGTATGATAAGAACGTCGAGGAAGAATTGC  223
            |||||| |||||||||| ||||||| || | ||||||||||||||| |||||||||||||
Sbjct  120  TCTTCAAGTCTCGGAATAATCACACATCGGGGTATGATAAGAACGTAGAGGAAGAATTGC  179

Query  224  AACCGAGTCAAGTGCCTGATGAAATGATAAAGCCTGACTCTGACAAATATTGGTCTCCTC  283
            |  ||||| ||||||| |||||| |||||||||| |||||||||||||| |||||||| |
Sbjct  180  AGTCGAGTAAAGTGCCGGATGAATTGATAAAGCCCGACTCTGACAAATACTGGTCTCCCC  239

Query  284  ATCCCCAAACCGGTGTCTTTGGACCTTCCTCCTCCTCGACCAACGCAAAGGACGAATTTC  343
            |||| |||||||||||||||||||||||||||||||||||| || |||| ||||| ||||
Sbjct  240  ATCCTCAAACCGGTGTCTTTGGACCTTCCTCCTCCTCGACCGACACAAATGACGATTTTC  299

Query  344  GCGGCGGTCAGGAGGACTCAGTGATGGAGGAGAAAGCCTGGTTCCGTCCAACAAGTCTCG  403
            ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  300  GCGGCGGCCAGGAGGACTCAGTGATGGAGGAGAAAGCTTGGTTCCGTCCAACAAGTCTCG  359

Query  404  AAGATTTGGACAAGACTCACCATTCGTAGCAAACAAACTCTTCCTTTTAT  453
            | ||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct  360  AGGATTTGGACAAGACTCACCATTCATAGCAAACAAACTCTTTCTATTAT  409



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16521370037


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5