BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17170.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488578 jgi|Araly1|488578|fgenesh2_kg.6__1712__AT5G17170.1 1600 0.0
> Ahg488578 jgi|Araly1|488578|fgenesh2_kg.6__1712__AT5G17170.1
Length=1068
Score = 1600 bits (866), Expect = 0.0
Identities = 1012/1078 (94%), Gaps = 28/1078 (3%)
Strand=Plus/Plus
Query 72 AAAACGCATGCAACAACATCGA---AATTAAGAATCAATCAAAGCTTCTTCGTTCGATCA 128
||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 3 AAAACGCATGCAACAACATTGATTCAATTAAGAATCAATC-AAGCTTCTTCGTTCGATCA 61
Query 129 CACTAGAAAGAAAGATGGCAACGTCTGGTGCGATTTCAGGAGCTACTGTCTCTTCCTTCT 188
||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 62 CACTAGAAAAAAAGAT-G----G-CTGGTGCGATTTCAGGAGCTACTGTCTCTTCCTTCT 115
Query 189 TCACCAAAACTACTACTACTTCAAACCCATCTCCCAAACTCCATTCCTCTGCTTCTCT-T 247
||||||||||| || ||||||||||||||||||| |||||||| | |||||||||||| |
Sbjct 116 TCACCAAAACTGCTTCTACTTCAAACCCATCTCCTAAACTCCACTACTCTGCTTCTCTGT 175
Query 248 TTATCACAGAAAACTGTGTTTCAAGGAGTTTCGTTGGAAGATTCGAAGAAGAGTGTATCA 307
|| ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct 176 TT-TCACAGAAAACTGGGTTTCAGGGAGTTTCATTGGAAGATTCGAAGAAGAGTGTATCA 234
Query 308 GAGATCTTCGCTGTCTCCGAGAGAAAGATCGGAGGGTTAAATGGGTTGAGAAGATTCGAA 367
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 235 GAGATCTTCGTTGTCTCCAAGAGAAAGATTGGAGGGTTAAATGGGTTGAGAAGATTCGAA 294
Query 368 ATCAAAGCGAGAGCAGCAGCTTCTAAGACAATAGAGGTTGAAGTAGATAAGCCTTTGGGT 427
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 295 ATCAAAGCGAGAGCAGCAGCTTCTAAAACAATAGAGGTTGAAGTAGACAAGCCTTTGGGT 354
Query 428 CTGACTCTAGGACAGAAGCAAGGCGGTGGAGTTGTCATCACCGGTGTGGACGGAGGAGGG 487
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 355 CTGACTCTAGGACAGAAGCCAGGCGGTGGAGTTGTCATCACCGGTGTGGACGGAGGTGGG 414
Query 488 AACGCAGCAAAAGCAGGGCTTAAATCTGGAGATCAAGTTGTGTACACAAGCAGTTTCTTT 547
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 415 AACGCAGCAAAAGCAGGGCTTAAATCTGGAGATCAAGTGGTGTACACAAGCAGCTTCTTT 474
Query 548 GGAGATGAGCTTTGGCCTGCAGATAAGCTTGGCTTTACTAAAACTGCAATTCAGGCAAAA 607
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 475 GGAGATGAGCTTTGGCCTGCAGATAAGCTTGGCTTTACTAAAACCGCTATTCAGGCCAAA 534
Query 608 CCTGATTCTGTCTACTTTGTTGTTAGCAGAGGTGCAGAAGTTGATGTTAAGAAACTAAAT 667
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 CCTGATTCTGTCTACTTTGTTGTTAGCAGAGGTGCAGAAGTTGATGTCAAGAAACTAAAT 594
Query 668 AAGCGTCCGGCTCCTCCACGGTTTGGAAGGAAGTTAACTGAGACTCAGAAGGCAAG-AGC 726
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 595 AAGCGTCCAGCTCCTCCACGGTTTGGAAGGAAGTTAACTGAGACTCAGAAGGCAAGTA-C 653
Query 727 TACTCACATTTGTCTTGATTGTGGATTCATATACACTTTACCCAAATCTTTTGACGAACA 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 654 TACTCACATTTGTCTTGATTGTGGATTCATATACACTTTACCCAAATCTTTTGATGAACA 713
Query 787 GCCGGATACATACGTATGTCCTCAATGTATAGCACCAAAGAAGAGGTTTGCAAAGTATGA 846
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 714 GCCGGATACATACGTATGTCCTCAATGTATAGCACCAAAGAAGAGGTTTGCGAAGTATGA 773
Query 847 CGTGAACACAGGAAAGGCCATAGGAGGAGGATTGCCTCCAATTGGTGTCATTGTTGGCTT 906
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 774 CGTGAACACAGGAAAGGCCATTGGAGGAGGATTGCCTCCAATTGGTGTCATTGTTGGCTT 833
Query 907 ATTGGCCGGTCTTGGAGCTGTTGGAGCTTTGCTTGTCTATGGTCTTCAATAAATTTTTCT 966
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||
Sbjct 834 ATTGGCCGGTCTTGGAGCTGTCGGAGCTTTGCTAGTCTATGGTCTTCAATAGATTTT-CT 892
Query 967 TAAA-ACTTTTATAATCTCTATAAAACAAGTCC------G--CTTTGTAATTGCAAACCA 1017
||| |||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 893 -AAACACTTTTATAATCTCTATAAAACAAGTCCTTATTTGAGCTTTGTAATTGTAAACCA 951
Query 1018 AGAATGAATGTTGATGACATCAACTTGAGAGTTAAATTAT-GTAAAGCATTTTTCGATTC 1076
||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||
Sbjct 952 AGAATGAATGTTGATGACATCAACTTGGGAGTTAAACTATTGTAAAGCATTTTTTGATTC 1011
Query 1077 TCTCCTTCTTATGTAACTCTTGTTT-TCTCTGTAATCAAACTAGTGCAGCAGCAAGAG 1133
|||||||||||||||||| ||| || ||||| || ||||| |||||||||||||||||
Sbjct 1012 TCTCCTTCTTATGTAACT-TTGGTTCTCTCTATAGTCAAATTAGTGCAGCAGCAAGAG 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5