BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17180.1 Length=372 Score E Sequences producing significant alignments: (Bits) Value Ahg488580 jgi|Araly1|488580|fgenesh2_kg.6__1714__AT5G17180.1 383 5e-106 > Ahg488580 jgi|Araly1|488580|fgenesh2_kg.6__1714__AT5G17180.1 Length=269 Score = 383 bits (207), Expect = 5e-106 Identities = 250/270 (93%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 1 ATGGCTAACGCAAAAGACGTGAAAGACTTCAAAGAAACTTTTC-AGAGATTTGATCAATA 59 ||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||| Sbjct 1 ATGGCCAACGCAAAAGACGTGAAAGAGTTCAAAGAAAC-TTTCAAGAGATTTGATCAATA 59 Query 60 TGTAAACGGAGAGATTCCATGGAGGGAATTTGACATGACTGGCGTACGCAAACGTTCTAC 119 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 60 CGTAAACGGAGAGATTCCATGGAGGGAATTTGACATGTCTGGCGTACGCAAACGTTCTAC 119 Query 120 TCCAATGACCAAGTCTGAAATCGACACAATATTTGTAGAGCTTGGAACTCGTGGTGAAGA 179 ||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 120 TCCAATGACAAAGTCTGAAATCGACAAAATATTCGTAGAGCTTGGAACTCGTGGTGAAGA 179 Query 180 TAGAGTCTTTAGAGATTCCAAGTTTTCCGGTAATCCTCTTCA---AGCTTCTGTCTCTCT 236 ||||||||| |||| ||||||||||||||||||||||||||| | | |||||||| | Sbjct 180 TAGAGTCTTCAGAGCTTCCAAGTTTTCCGGTAATCCTCTTCATCCAACATCTGTCTCAGT 239 Query 237 TAAACATAAGCCTAAAGATGTGATTAATGT 266 ||||| ||| |||||||||||||||||||| Sbjct 240 TAAACCTAAACCTAAAGATGTGATTAATGT 269 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13278144972 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5