BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17180.1
Length=372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488580 jgi|Araly1|488580|fgenesh2_kg.6__1714__AT5G17180.1 383 5e-106
> Ahg488580 jgi|Araly1|488580|fgenesh2_kg.6__1714__AT5G17180.1
Length=269
Score = 383 bits (207), Expect = 5e-106
Identities = 250/270 (93%), Gaps = 5/270 (2%)
Strand=Plus/Plus
Query 1 ATGGCTAACGCAAAAGACGTGAAAGACTTCAAAGAAACTTTTC-AGAGATTTGATCAATA 59
||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct 1 ATGGCCAACGCAAAAGACGTGAAAGAGTTCAAAGAAAC-TTTCAAGAGATTTGATCAATA 59
Query 60 TGTAAACGGAGAGATTCCATGGAGGGAATTTGACATGACTGGCGTACGCAAACGTTCTAC 119
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 CGTAAACGGAGAGATTCCATGGAGGGAATTTGACATGTCTGGCGTACGCAAACGTTCTAC 119
Query 120 TCCAATGACCAAGTCTGAAATCGACACAATATTTGTAGAGCTTGGAACTCGTGGTGAAGA 179
||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 120 TCCAATGACAAAGTCTGAAATCGACAAAATATTCGTAGAGCTTGGAACTCGTGGTGAAGA 179
Query 180 TAGAGTCTTTAGAGATTCCAAGTTTTCCGGTAATCCTCTTCA---AGCTTCTGTCTCTCT 236
||||||||| |||| ||||||||||||||||||||||||||| | | |||||||| |
Sbjct 180 TAGAGTCTTCAGAGCTTCCAAGTTTTCCGGTAATCCTCTTCATCCAACATCTGTCTCAGT 239
Query 237 TAAACATAAGCCTAAAGATGTGATTAATGT 266
||||| ||| ||||||||||||||||||||
Sbjct 240 TAAACCTAAACCTAAAGATGTGATTAATGT 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13278144972
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5