BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17190.1
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488581 jgi|Araly1|488581|fgenesh2_kg.6__1715__AT5G17190.1 846 0.0
> Ahg488581 jgi|Araly1|488581|fgenesh2_kg.6__1715__AT5G17190.1
Length=724
Score = 846 bits (458), Expect = 0.0
Identities = 502/523 (96%), Gaps = 4/523 (1%)
Strand=Plus/Plus
Query 8 aaagatctaaaacttgttcactaagaaaaaatcaaaatca-aatcagagcaccaaaaCCG 66
||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 3 AAAGATCTAAAACTTGTTCACTAAG-AAAAA--AAAATCACAATCAGAGCACCAAAACCG 59
Query 67 ACTCAGATCTAGATCGGATTTCTCCAATGGCTCTCGAATGGGTTGTGTTAGGTTACGCAG 126
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ACTCAGATCTAGATCGCAATTCTCCAATGGCTCTCGAATGGGTTGTGTTAGGTTACGCAG 119
Query 127 CAGCAGCTGAAGCGATCATGGTGATTCTCTTGACGATGCCTGGACTTGACGCTCTCCGCA 186
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 CAGCAGCTGAAGCAATCATGGTGATTCTCTTGACGATGCCTGGACTCGACGCTCTCCGCA 179
Query 187 AAGGATTAGTCGCTGTAACTCGTAATCTCTTGAAACCGTTTCTCTCGATAATCCCGTTTT 246
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 180 AAGGATTAGTCGCTGTGACTCGTAATCTCTTGAAGCCGTTTCTCTCGATAATTCCGTTTT 239
Query 247 GTCTCTTCCTTCTTATGGATATTTACTGGAAGTATGAGACTCGACCTTCTTGCGATGGTG 306
|||||||||||||||||||||| || |||||||| ||||||||||||||||| ||| |||
Sbjct 240 GTCTCTTCCTTCTTATGGATATCTATTGGAAGTACGAGACTCGACCTTCTTGTGATAGTG 299
Query 307 ATTCGTGTACTCCTTCTGAGCATCTTCGTCACCAGAAATCGATCATGAAGTCTCAGCGTA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATTCGTGTACTCCTTCTGAGCATCTTCGTCACCAGAAATCGATCATGAAGTCTCAGCGTA 359
Query 367 ACGCGCTTCTGATTGCGTCGGCTCTTGTTTTCTACTGGATTTTGTACTCTGTCACGAATT 426
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACGCGCTTCTGATCGCGTCGGCTCTTGTTTTCTACTGGATTTTGTACTCTGTCACGAATT 419
Query 427 TGGTTGTGAGGATTGAGCAGCTTAATCAGAGGGTTGAGAGGCTCAAGAACAAGGATTAAG 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGTTGTGAGGATTGAGCAGCTTAATCAGAGGGTTGAGAGGCTCAAGAACAAGGATTAAG 479
Query 487 TAAGATCCAGCTGCTTCGTCCCTCGTCTTCCTCAGGTCCTTTA 529
||||| || ||||||||||| |||||| |||||||||||||||
Sbjct 480 TAAGAGCCTGCTGCTTCGTCTCTCGTCGTCCTCAGGTCCTTTA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28249081497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5