BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17210.1
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488583 jgi|Araly1|488583|fgenesh2_kg.6__1717__AT5G17210.1 1314 0.0
> Ahg488583 jgi|Araly1|488583|fgenesh2_kg.6__1717__AT5G17210.1
Length=925
Score = 1314 bits (711), Expect = 0.0
Identities = 867/938 (92%), Gaps = 27/938 (3%)
Strand=Plus/Plus
Query 1 AAAAGTGAGTGCGGTGTTT-A--ATGGGTTTGTCACCAACTTTCCATTTTCTTACCAACG 57
||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAAGCGAGTGCGGTGTTTAATGATGGGTTTGTCACCAACTTTACATTTTCTTACCAACG 60
Query 58 AAGAAGAAGCAGaaaaaaagtaaacaa-agactaaaaaaaaaaaGCCAGCATCTTCGGAG 116
|||||||||| |||||||| |||||| | | ||||||||||||| ||||||||| ||||
Sbjct 61 AAGAAGAAGC-CAAAAAAAGCAAACAATAAAATAAAAAAAAAAAGTCAGCATCTTTGGAG 119
Query 117 TTGGTGGGAGAGAGACAGAGATGGAGAGGAGAAAGATTGTGATGTGTGGTGTTTTATTTC 176
| | ||| || || ||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 120 -T--T-GGA-AGTGAGAGAGATGGAGAGGAGGAAGGTTGTGATGTGTGGTGTTTTATTTC 174
Query 177 TTCTTGGTTTATTATCAGCTGTTACTGCCTTCGTCGCTGAAGCTACTCGAATCAAGAGAT 236
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 175 TTCTTGGTTTATTATCAGCTGTTACTGCCTTCGCCGCTGAAGCTACTCGAATCAAGAGAT 234
Query 237 CTCAGGTCACGGTTACCGTTTCGGATTCAATCACAAAATGCACTTATCCAAGAAGTCCAG 296
||||||||| |||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 235 CTCAGGTCAAGGTTACTGTTTCGGATTCAATAAAAAAATGCACTTATCCAAGAAGTCCAG 294
Query 297 CTTTCAATCTCGGCTTCACTTCAGCTCTCTTTCTGATGATGGCTCAGATAATAGTCAGTG 356
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 295 CTTTTGATCTCGGCTTCACTTCAGCTCTCTTTCTGATGATGGCTCAGATCATAGTCAGCG 354
Query 357 TCTCAAGCGGTTGTTTCTGTTGTAGAAAAGGTCCTGCTCCTTCAAGGTCTAATTGGATTA 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 355 TCTCAAGCGGTTGTTTCTGTTGTAGAAAAGGTCCTGCTCCTTCGAGGTCTAATTGGATTA 414
Query 417 TCTCCTTAATCTGCTTTGTTGTTTCCTGGTTCACTTTTGTAATAGCTTTCCTCGTGCTGC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TCTCCTTAATCTGCTTTGTTGTTTCCTGGTTCACTTTTGTAATAGCTTTCCTCGTGCTGC 474
Query 477 TTTCTGGAGCTGCACTCAACGATGAACACACCGAGGAATCAATGAATGCTGGTACCTACT 536
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTACTGGAGCTGCACTCAACGATGAACACACCGAGGAATCAATGAATGCTGGTACCTACT 534
Query 537 TTTGCTACATAGTGAAACCAGGCGTTTTCTCTACCGGTGCTGTGCTTTCGCTTGTTACTA 596
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 535 TTTGCTACATAGTGAAACCAGGCGTTTTCTCTACCGGCGCTGTGCTTTCGCTTATTACTA 594
Query 597 TTGCCCTTGGGATTGTCTACTATTTATGTTTGACTTCAAATAAGCAAATTGTTGCTGCCA 656
||||||| ||||||||||||||||| ||||||||||||| |||||||| |||||||| ||
Sbjct 595 TTGCCCTCGGGATTGTCTACTATTTGTGTTTGACTTCAAGTAAGCAAACTGTTGCTGTCA 654
Query 657 CAACGAC-----C---C-AAGGAACAGGAATAGCAATGGGGCAGCCTCAGATTCCAGAGA 707
||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CAACGACGGGGGCGAACCAAGGAACAGGAATAGCAATGGGGCAGCCTCAGATTCCAGAGA 714
Query 708 GAGTAGAAGATCCTGTTTTTGTTCATGAGGATACTTACATGAGAAGACAGTTCACTTAAA 767
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GAGTAGAAGATCCCGTCTTTGTTCATGAGGATACTTACATGAGAAGACAGTTCACTTAAA 774
Query 768 AACAGACAAAGCTTGCTTGTAAAG-CACGTTAGGTTTAGTAGAAGATTTAGACAAAATGA 826
||||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||| ||
Sbjct 775 AACAGACAAGGCTTGCTTGTAAAAACACTTTAGGTTTAGGAGAAGATTTAGACAAAAGGA 834
Query 827 TTAACGGATATGTGTTTGATTAAGAGTATTGAAACTTTGTAATGATTGTTATTCTTGATT 886
|||| |||| ||||||||||||||||||| ||||||||||| ||||| | ||| || |
Sbjct 835 TTAAAGGATTTGTGTTTGATTAAGAGTAT-GAAACTTTGTA-TGATT-T-ATT---GACT 887
Query 887 GAAGTAGAAATCTTTGAGAACCCCAAAAACGTCACTTA 924
||||| |||||| |||| |||| |||||||||||||||
Sbjct 888 GAAGTGGAAATCCTTGAAAACCACAAAAACGTCACTTA 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34996837806
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5