BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17240.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488588 jgi|Araly1|488588|fgenesh2_kg.6__1722__AT5G17240.1 2183 0.0
> Ahg488588 jgi|Araly1|488588|fgenesh2_kg.6__1722__AT5G17240.1
Length=1525
Score = 2183 bits (1182), Expect = 0.0
Identities = 1392/1493 (93%), Gaps = 15/1493 (1%)
Strand=Plus/Plus
Query 4 TGGACTTAGAACACCAAACCATGGAGACGTTCCTGCGATGGGCAGCAGAGATTGGCATTT 63
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 11 TGGACTTAGAACACCAAACCATGGAAACGTTCCTGCGTTGGGCAGCAGAGATTGGCATTT 70
Query 64 CAGATTCTATTGATTCTTCTCGATTTCGCGATTCGTGTCTTGGACATT-CTCTTTCCGTC 122
||||||| ||||||||||||||||||| ||||||||||| || |||| | |||||||||
Sbjct 71 CAGATTCCGTTGATTCTTCTCGATTTCGAGATTCGTGTCTCGGCCATTGC-CTTTCCGTC 129
Query 123 TCCGACTTCCCTGACGCCGGCGGGAGAGGTTTGGGAGCTGCTCGTGAGCTCAAGAAAGGA 182
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 130 GCCGACTTCCCTCACGCCGGCGGGAGAGGTTTGGGAGCTGTTCGTGAGCTCAAGAAAGGA 189
Query 183 GAATTGGTTTTGAAAGTCCCCAGAAAAGCCTTGATGACTACAGAATCCATAATTGCTAAA 242
|||||||||||||||||||||||||| || ||||||||||||||||| || || ||||||
Sbjct 190 GAATTGGTTTTGAAAGTCCCCAGAAACGCATTGATGACTACAGAATCTATGATCGCTAAA 249
Query 243 GATCTAAAATTGAGCGATGCTGTTAATCTTCA-CAATTCACTTTCTTCGACTCAGATACT 301
|||| ||||||| ||||| |||||||| || | ||||| |||||||||||||| ||
Sbjct 250 GATCGGAAATTGAATGATGCCGTTAATCTCCATGGA-TCACTCTCTTCGACTCAGATTCT 308
Query 302 GAGTGTATGCTTATTGTATGAAATGAGCAAGGAGAAGAAG-TCTTTTTGGTATCCATACT 360
||||||||||||||||||||||||| |||||| |||| || || ||||||||||||||||
Sbjct 309 GAGTGTATGCTTATTGTATGAAATGGGCAAGGGGAAG-AGTTCCTTTTGGTATCCATACT 367
Query 361 TGTTCCATATACCTCGTGACTATGATCTCTTGGCTACATTT-GGGAATTTCGAGAAGCAA 419
|| | ||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 368 TGGTGCATTTACCTCGTGACTATGATCTCTTGGCCACATTTGGGGAA-TTCGAGAAGCAA 426
Query 420 GCTTTACAAGTTGAAGATGCTGTTTGGGCTACAGAAAAAGCCACAGCCAAGTGTCAGTCT 479
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 427 GCTTTACAAGTTGAAGATGCTGTTTGGGCTACAGAAAAAGCCATAGCCAAGTGTCAGTTT 486
Query 480 GAGTGGAAAGAAGCTGGTTCGTTAATGAAGGAGTTAGAGCTGAAGCCTAAGTTTCGGAGT 539
|||||||| |||| ||||| || ||| ||||||||||||| ||| | ||||||||||||
Sbjct 487 GAGTGGAAGGAAGTTGGTTTATTGATGGAGGAGTTAGAGCTTAAGTCAAAGTTTCGGAGT 546
Query 540 TTCCAAGCATGGCTATGGGCTTCTGCAACGATATCTTCACGAACACTGCATGTACCATGG 599
|||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 547 TTCCAAGCATGGCTCTGGGCTTCTGCAACGATATCTTCGCGGACACTGCACGTACCATGG 606
Query 600 GATAGTGCTGGGTGTTTGTGTCCTGTAGGGGACTTGTTCAACTACGATGCTCCTGGAGAT 659
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GATAGTGCTGGGAGTTTGTGTCCTGTAGGGGACTTGTTCAACTACGATGCTCCTGGAGAT 666
Query 660 TATTCGAATACCCCACAAGGTCCTGAGAGTGCTAATAATGTAGAGGAAGCAGGACTTGTT 719
||| | |||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 667 GATTTGCATACCCTAGAAGGTCCTGAGAGTGCTAATGATGTAGAGGAAGCAGGACTTGTT 726
Query 720 GTTGAGACACACTCTGAAAGGCTCACAGATGGTGGATTCGAGGAAGATGTCAATGCTTAC 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GTTGAGACACACTCTGAAAGGCTCACAGATGGTGGATTCGAGGAAGATGTCAATGCTTAT 786
Query 780 TGTCTTTATGCAAGAAGGAATTATCAGCTAGGAGAACAGGTTCTTCTATGTTATGGGACT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TGTCTTTATGCAAGAAGGAATTATCAGCTAGGAGAACAGGTTCTTCTATGTTATGGGACT 846
Query 840 TACACGAATCTAGAGCTTCTTGAGCACTATGGGTTTATGTTAGAAGAGAACTCAAATGAC 899
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 847 TACACAAATCTAGAGCTTCTCGAGCACTATGGGTTTATGTTAGAAGAGAACTCAAATGAC 906
Query 900 AAGGTCTTCATTCCTCTAGAAACCAGCCTATTTTCTCTAGCTTCTTCATGGCCTAAAGAT 959
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 907 AAGGTCTTCATTCCTCTAGAAACCAGTCTTTTTTCACTAGCTTCTTCATGGCCTAAAGAT 966
Query 960 TCTTTATACATTCATCAAGACGGTAAGCTGTCTTTTGCGCT-GATATCCACGTTGAGACT 1018
|| ||||||||||||||||| ||||||| |||||||||||| | |||| |||||||||||
Sbjct 967 TCCTTATACATTCATCAAGATGGTAAGCCGTCTTTTGCGCTTG-TATCGACGTTGAGACT 1025
Query 1019 GTGGCTGATCCCACAGAGCCAGCGTGACAAGTCAGTTATGCGCCTTGTTTACGCTGGATC 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1026 GTGGCTGATCCCACAGAGCCAGCGTGACAAGTCAGTTATGCGCCTTGTTTACGCTGGAAC 1085
Query 1079 TCAGATATCTGTGAAGAATGAGATTCTTGTCATGAAGTGGATGTCAGAGAAATGTGGAAG 1138
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1086 TCAGATATCTGTGAAGAATGAGATTCTAGTCATGAAGTGGATATCAGAGAAATGTGGAAG 1145
Query 1139 TGTTTTAAGGGATCTGCCAACTTCTGTCAC-AGAGGACACTGTGCTTCTTCATAACATTG 1197
||| |||||||||||||||||||||| | ||| |||||| ||||||||||||||||||
Sbjct 1146 TGT---AAGGGATCTGCCAACTTCTGTC-CTAGAAGACACTCTGCTTCTTCATAACATTG 1201
Query 1198 ACAAACTCCAAGATCCAGAATTGCGTTTGGAGCAGAAAGAAACAGAAGCTTTTGGCAGCG 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1202 ACAAACTCCAAGATCCAGAATTGCGTTTGGAGCAGAAAGAAACAGAAGCTTTTGGCAGTG 1261
Query 1258 AAGTACGTGCTTTTCTTGATGCAAATTGTTTGTGGGATGTCACTGTATTATCTGGGAAAC 1317
||||| | |||||||| ||||||||| ||||| |||||||||||| ||| ||||||||||
Sbjct 1262 AAGTATGCGCTTTTCTCGATGCAAATCGTTTGAGGGATGTCACTGGATTTTCTGGGAAAC 1321
Query 1318 CTATAGAATTTTCCAGGAAAACTAGCAGGATGCTGAGCAAATGGAGATGGTCTGTGCAGT 1377
|| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 1322 CTGTAGAATTTTCCAGGAAAACTAGCAGGATGCTGAGCAAATGGAGGTTGTCTGTGCTGT 1381
Query 1378 GGAGGCTAAGCTACAAGAGAACTCTAGCAGATTGCATCTCTTATTGTAATGAGAAAATGA 1437
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1382 GGAGGCTAAGCTACAAGAGAACTCTTGCAGATTGCATCTCTTATTGTAGTGAGAAAATGA 1441
Query 1438 ATAATCTCTTAGGTACCCAAGATAGGCTTAGAGATTTGTAACTTGAATCGAAA 1490
||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1442 ATAATCTCTCATGTACCCAAGATAGGCTTAGAGATTTGTAACGTGAATCGAAA 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5