BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17260.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488590 jgi|Araly1|488590|fgenesh2_kg.6__1724__AT5G17260.1 2115 0.0
Ahg903132 jgi|Araly1|903132|Al_scaffold_0003_260 73.1 5e-12
> Ahg488590 jgi|Araly1|488590|fgenesh2_kg.6__1724__AT5G17260.1
Length=1430
Score = 2115 bits (1145), Expect = 0.0
Identities = 1340/1435 (93%), Gaps = 10/1435 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCCGGTCTCGTTGCCTCCAGGTTTTAGGTTCCATCCAACGGACGAAGAACTAATC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCCGGTCTCATTGCCTCCAGGTTTTAGGTTCCATCCAACGGACGAAGAACTAATC 60
Query 61 ACTTACTATCTCAAGAGAAAGATCAACGGCCAAGAGATCGAGCTAGAGATTATCCCTGAA 120
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 ACTTACTATCTCAAGAGAAAGATCAACGGTCAAGAGATCGAGCTAGAAATTATCCCTGAA 120
Query 121 GTAGACCTCTACAAGTGCGAACCATGGGACTTGCCAGGGAAGTCACTGATTCCTAGCAAA 180
|||||||||||||||||||||||||| | ||| ||||||||||| || |||||||||||
Sbjct 121 GTAGACCTCTACAAGTGCGAACCATGTAAATTGGCAGGGAAGTCATTGCTTCCTAGCAAA 180
Query 181 GACCAAGAATGGTTCTTCTTCAGCCCACGGGACAGAAAGTACCCCAATGGTTCAAGGACA 240
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GACCAAGAATGGTACTTCTTCAGCCCACGGGACAGAAAATACCCCAATGGTTCAAGGACG 240
Query 241 AACCGGGCAACAAAAGGCGGTTATTGGAAAGCCACAGGCAAAGACCGGCGGGTGAGTTGG 300
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 241 AACCGGGCAACAAAAGGCGGTTACTGGAAAGCCACGGGCAAAGACCGGCGTGTGAGTTGG 300
Query 301 AGAGATCGAGCCATTGGGACCAAGAAAACATTAGTTTACTACCGTGGACGTGCCCCGCAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AGAGATCGAGCCATTGGGACCAAGAAAACATTAGTTTACTACCGTGGACGTGCCCCACAT 360
Query 361 GGTATTAGAACTGGTTGGGTCATGCATGAATATCGCCTCGATGAATCCGAATGCGAGCCT 420
||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 361 GGTATTAGAACTGGTTGGGTCATGCATGAATATCGCCTCGATGAAACTGAATGCGTGCCT 420
Query 421 TCTGCATTTGGCATGCAGGACGCATATGCACTCTGTCGCGTGTTTAAGAAAATAGTGATT 480
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 TCTGCATTTGGAATGCAGGACGCATATGCACTTTGTCGCGTGTTTAAGAAAATAGTGATT 480
Query 481 GAGGCGAAACCAAGGGATCAACATCAGCAGCAGCATCAACCTTACGTCCACACGAGCTCG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGGCGAAACCAAGGGATCAACATCAGCAGCAGCATCAACCTTACGTCCACACGAGCTCG 540
Query 541 AATATAAGTGGTAGCTCGAGTTTTGACGTTTGTTCAGATCTTGAAATAAGTTCAAACACA 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 AATATAAGCGGTAGCTCGAGTTTTGACGTTTGTTCAGATCTTGAAATAAGTTCAAACGCA 600
Query 601 CCTTATAATACCGCTGCCCATATCCAACCGCGATTTGGAAACGCAAACGCAATTAGTGAT 660
|||||||||| ||||||| |||||||| | ||||||||||||||||||||||| | ||||
Sbjct 601 CCTTATAATAGCGCTGCCGATATCCAATCACGATTTGGAAACGCAAACGCAATCACTGAT 660
Query 661 CATGATGACTGGTCGCAGTACTTGTCACAAAACATGCCTACAAGCTTTTCAGATTACGGA 720
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 661 CATGATGACTGGTCGCAGTACTTGTCACAAAACATGCCTACGAGCTTTGCAGATTATGGA 720
Query 721 TCTCCTTATGGACCATACCTCACTCAATCAAAGGTGAATACAGAAGTGCAATGTGAGATG 780
|||||||||||||| | |||||| ||||||||||||||||||||| || |||||||||||
Sbjct 721 TCTCCTTATGGACCTTCCCTCACACAATCAAAGGTGAATACAGAAATGGAATGTGAGATG 780
Query 781 TTTCAACACCAAATGTCATTGCCACCATTGCGAGTAGAAAACTCGCAGGCTCAAACCAGC 840
|| ||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct 781 TTGCAACATCAAATGTCACTGCCACCATTGCGAGTAGAAAATTCGCCGGCTCAAACCAGG 840
Query 841 GATTTCTCCAAGAGACT-ACATCAAAACAGTGGTCAAAGTGGGTTCGACGACTTTACTTT 899
||||||||||||||| | | ||||||||||||||||||| || |||||||||||||||||
Sbjct 841 GATTTCTCCAAGAGAATGA-ATCAAAACAGTGGTCAAAGCGGTTTCGACGACTTTACTTT 899
Query 900 CGCTGCAAGTAACTCCAACCAATTCTACAACAGCAACGTTGATGATCATTTGATACACAT 959
||| ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 900 CGCCGCAAGTAACTCCAACCAATTCTATAACAATAACGTTGATGATCATTTAATACACAT 959
Query 960 TGGAAATCTTGACGA-GCAGAGT-TATA-TAGAAGAACAAGAATTGATTTTGCCAAGTTT 1016
|||| |||| || | | | | | | | |||||||| |||| |||||||||||||||
Sbjct 960 TGGAGATCTCGATGTTGGAAATTCTTTTCTAGAAGAAGAAGA---GATTTTGCCAAGTTT 1016
Query 1017 CCAGAGTAATGATCAAGATCTTGAACTTTATGGCGGATCTCGGACCAATACAAT-AGACA 1075
||||||| ||||||||||||||| ||||||| ||||| |||||||||||||| | |||
Sbjct 1017 TGAGAGTAACGATCAAGATCTTGAATTTTATGGTGGATCACGGACCAATACAATCA-ACA 1075
Query 1076 ACATAGAGATCGACGATTTTTTCTCGTTTGAGAACCAAGCACAAGACAACGACAACTCAA 1135
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ACATAGAGATCGATGATTTTTTCTCGTTTGAGAACCAAGCACAAGACAACGACAACTCAA 1135
Query 1136 ACGTAACCCCAAACTCGGCAGGATTCGAAATGATTGGAGAAGAGATTATAGTAAACCATA 1195
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1136 ACGTAACCCCAAACTCCGCAGGATTGGAAATGATTGGAGAAGAGATCATAGTAAACCATA 1195
Query 1196 AAATGCTCATTAGTACACGGCAGACTACGGAGATTTTATACTATCAAGTGGTACCGTCGC 1255
||||||| |||||||||||||| || ||||||||||||||||| ||||| ||||||||||
Sbjct 1196 AAATGCTTATTAGTACACGGCAAACGACGGAGATTTTATACTACCAAGTCGTACCGTCGC 1255
Query 1256 AGATATTGAAAATTCACATAAATCCGGTTCATGGAAATGAAGAGAGAACAATGTTAATGG 1315
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1256 AGATACTGAAAATTCACATAAATCCGGTACATGGAAATGAAGAGAGAACAATGTTAATGG 1315
Query 1316 AAGAAGACAGTGATGATTCTTGGTTCCAGAAGGCTGAAAATGTTGCGAAGATGAAACTGA 1375
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1316 AAGAAGGCAGTGATGATTCTTGGTTCCAGAAGGCTGAAAATGTTGCGAAGTTGAAATTGA 1375
Query 1376 AACAGATTAGTTTAGTTGCAAAACGTTATTACAAATGTCTTACTATTATTTTCTG 1430
| ||||||||| |||||||||||||||||||||||||||| || |||||||||||
Sbjct 1376 AGCAGATTAGTCTAGTTGCAAAACGTTATTACAAATGTCTCACAATTATTTTCTG 1430
> Ahg903132 jgi|Araly1|903132|Al_scaffold_0003_260
Length=1446
Score = 73.1 bits (39), Expect = 5e-12
Identities = 197/267 (74%), Gaps = 36/267 (13%)
Strand=Plus/Plus
Query 715 TACGGATCTCCTTATGGACC-ATACCTCACTCAATCA-AAGGTGAATACAGAAG-TGC-A 770
||||| ||| ||||| |||| | ||| |||| || | ||||| ||||||| || | | |
Sbjct 682 TACGGTTCTTCTTATAGACCGTTCCCT-ACTCCAT-ATAAGGTTAATACAG-AGAT-CGA 737
Query 771 ATG-TGAGATGTTTCAACACCAA-ATGTCAT-TGCCACCATTGCGAGTAGAAAACTC-GC 826
||| | | ||||| ||||| ||| || || | | ||||| ||||| ||||| ||||| |
Sbjct 738 ATGTTCA-ATGTTACAACA-CAATATATC-TCTACCACCGTTGCGTGTAGAGAACTCTTC 794
Query 827 AGGCTCAAACCA--GCGATTTCTCCAAGAG-ACT-ACATCAAAACAGTGGTCAAAGTGG- 881
|| | | | ||||||||| |||||| | | || ||| |||| | | || |||
Sbjct 795 -GG-T-TAGTGATTGCGATTTCTTCAAGAGTA-TGAC-TCACAACAACGAT--AA-TGGC 846
Query 882 G--TTCGACGACTTTACTTTCGCTGCAAGTAACTCCAACCAATTCTACAACAGCAACGTT 939
| || || |||||||||||||||||||||||||||||||| ||| || ||| |||
Sbjct 847 GTTTTTGATGACTTTACTTTCGCTGCAAGTAACTCCAACCA---CTATAATAGC---GTT 900
Query 940 GATGATCATTTGATACACATTGGAAAT 966
| |||||| |||| ||| |||| |||
Sbjct 901 GGTGATCAAGTGATCCACGTTGGCAAT 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5