BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17270.1
Length=2704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941232 jgi|Araly1|941232|scaffold_601776.1 4132 0.0
Ahg893637 jgi|Araly1|893637|Al_scaffold_0006_1633 2591 0.0
Ahg915194 jgi|Araly1|915194|Al_scaffold_0009_163 121 3e-26
> Ahg941232 jgi|Araly1|941232|scaffold_601776.1
Length=2725
Score = 4132 bits (2237), Expect = 0.0
Identities = 2557/2709 (94%), Gaps = 31/2709 (1%)
Strand=Plus/Plus
Query 1 AACCATGGTCGACGGCGAAGTTGAAATCCTTCGCGGTTACGAGCTCCGTCTCCTCCGGTG 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 22 AACCATGGTCGACGGCGAAATTGAAATCCTTCGCGGTTACGAGCTCCGTCTCCTCCGGTG 81
Query 61 CACTGTATCCTTTCCACAGA-CAGGTTCTCCTCTCGAATCCCAGCCGCTCGATGGAACTC 119
||| || || || |||| | ||| | |||||||||||| || | | |
Sbjct 82 CACCGTCTCGTTAACACA-ATCAGATCCTCCTCTCGAAT------CG--C-A--G----- 124
Query 120 AATCCGGAACCCATCCACACGACTCTCTTATAACGTCTCTTTTGTCTTCAATCGAGGCTG 179
|||||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 125 --TCCGGAGTTCATCCATACGACTCTCTTATAAGGTCCCTTTTGTCTTCAATCGAGGCTG 182
Query 180 GAGACTATCTTGGAGCTCTATCCTCCGACGCTACTAAGCTAATACTCGGAGATTCCGAGT 239
|||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 183 GAGACTATCTTGGAGCTCTAGCCTCCGACGCTACTAGGCTAATAATCGGAGATTCCGAGT 242
Query 240 T-AAACTTGGTTGATACGGTTGATTCCGCCGAGCAAGTTTACTCCGAGCTTCTCGACAAG 298
| || | |||||||||||||||||||| |||| ||||||||||||||||||| |||||
Sbjct 243 TCGAA-GTAGTTGATACGGTTGATTCCGCTGAGCGAGTTTACTCCGAGCTTCTCTACAAG 301
Query 299 GTCGAATCGTTCGTGGTGAACGATTCTTCAGATGAAATCGATAAGGCTCGCCGTGCTGTT 358
||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 302 GTCGAATCGTTCGTGTTAAACGAATCTTCAGATGAAATCGGTAAGGCTCGCCGTGCTGTT 361
Query 359 CTGGTGATGTGCTTAGCAATCGCTACTGCTTTGTGGTTCACCCGTTGCAATCTGACTGGG 418
|||||||||||||||||||| || ||||||| |||||||| || |||||| |||| |||
Sbjct 362 CTGGTGATGTGCTTAGCAATTGCGGCTGCTTTTTGGTTCACTCGGTGCAATTTGACCGGG 421
Query 419 TCAACGGAAGGATCAACGAAATGTTCGTTGCCCCTTAG-AGTGTCAGAGAGTAAGGAATT 477
|| || ||||||||||| ||||||||||| || || | ||| ||||| ||||| ||| |
Sbjct 422 TCGACAGAAGGATCAACAAAATGTTCGTT-ACCGTTTGTAGTATCAGAAAGTAAAGAACT 480
Query 478 AGTTGAGTGGGAGAACTGGGCTAAGATTCAGCTCATGTCTGTCGGTTCTGACTTGCTTGG 537
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 481 AGTTGAATGGGAGAACTGGGCTAAGATTCAGCTCATGTCTGTTGGTTCTGACTTGCTCGG 540
Query 538 GAAGTTTTCTAATCTCCAGCATTTAGTTTTTGCTAGATTGCTCCTGTTCAAGTTGAAAGA 597
|||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||
Sbjct 541 GAAGTTTTTTAATCTCCAGCATTTAGTTTTTGCTAGAATGCTTCTGTTAAAGTTGAAAGA 600
Query 598 TTTGTTGTTTGAGATAACTTCAACTGAAACTTTTGAAGTAAGGAGTATTTCATGGTGGCT 657
|||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 TTTGTTGTTTGAGACAACTGCAACTGAAACTTTTGAATTAAGGAGTATTTCATGGTGGCT 660
Query 658 TGTCAGAGTTTTACTGATTCATCAAAGAGTTCTACAAGAGCGATCTTCATCTTTGTTTGA 717
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 TGTCAGAGTTTTACTTATCCATCAAAGAGTTCTACACGAGCGATCTTCATCTTTGTTTGA 720
Query 718 AATGTTGCAAGTTTACATGGCCGAAGCTATAGACCATTTTGGAGAATTGGAAAAAGTAAA 777
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 721 GATGTTGCAAGTTTACATGGCCGAAGCTCTAGACCATTTTGGAGCATTGGAAAAAGTAAA 780
Query 778 AAGCTACTGGGGTGCCAATTTGCTAGAAGACGAAGCTTCATCCATCACGTCAACTATCCA 837
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||
Sbjct 781 AAGCTACTGGGGTGCCAAGTTGCTAGTAGACGAAGCTTCATCCATCACGTCAACCATCCA 840
Query 838 TCTGGAAGCATGTGTACTGCAATATATATATGGAAGGATTGATCCTTCACGGTTGCAGCT 897
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 841 TCTGGAGGCATGTGTACTGCAATATATATATGGAAGGATTGATCCTGCTCGGTTGCAGCT 900
Query 898 TGAATCTGCTAAAGCAGCAGCAAGCCTAGAGTTCTCTGTTACCGGGGCTCTTGGATTTCG 957
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 901 TGAATCTGCTAAAGCAGCAGCAGGGCTAGAGTTCTCTGTTACCGGGGCTCTTGGATTTCG 960
Query 958 TACTATTCACCAAGTAGATCCAAAGGCACAGATGGTATTGGTAGCCAATACTAGCTCATC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TACTATTCACCAAGTAGATCCAAAGGCACAGATGGTATTGGTAGCCAATACTAGCTCATC 1020
Query 1018 CAATGGGGATGTGAGGTTGGCCTCTGAGAAAGCTGATGTTGGACCTTATGAAGCTTGGGG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CAATGGGGATGTGAGGTTGGCCTCTGAGAAAGCTGATGTTGGACCTTATGAAGCTTGGGG 1080
Query 1078 AGGTGAAGCACCTGAAGTATATATGACTCCCAAACTAGTGAACAACGAGAGTGAAGCTGG 1137
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1081 AGGTGAAGCACCTGAAGTATATATGACTCCCAAACTAGTAAACAACGAGAGTGAAGCTGG 1140
Query 1138 CAAAGATTCTGTGCCCTTGAAACCAGTTGAACAGGCATTGATTTTGGCCCAGTGCCTTCT 1197
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GAAAGATTCTGTGCCCTTAAAACCAGTTGAACAGGCATTGATTTTGGCCCAGTGCCTTCT 1200
Query 1198 AATTGAAAGGGGTAGTCGGCACGATGAGATGCAAAGATGGGATATGGCTCCATATATTGA 1257
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AATTGAAAGGGGTAGTAGGCACGATGAGATGCAAAGATGGGATATGGCTCCATATATTGA 1260
Query 1258 GGCAATAGATTCTCAAAAGTCAACATATTTTGTTCTACGGTGTTTTTGTGACTTACTACG 1317
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1261 GGCAATTGATTCTCAAAAGTCAACACATTTTGTTCTACGGTGTTTTTGTGACTTATTACG 1320
Query 1318 TGTTCGATGGGAATCAACTAGAGGTCGTACAAAGGGACGCGCCCTAGAGATGATGGATAA 1377
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1321 TGTTCGATGGGAATCAACTAGAGGTCGTACAAAGGGACGCGCCCTGGAGATGATGGATAA 1380
Query 1378 ATTGGTTGGAGCTATTAACAAGAGCGATCCTGGAGTATCAAACAGGATCCCTTTATGCTA 1437
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1381 ATTGGTTGGAGCTATTAACAAGAGCGATCCTGGAGTATCAAACCGTATCCCTTTATGCTA 1440
Query 1438 TGCTGTCCATCTTCCTACTATTCCTGCTCTGAGAAAGGAATACGGTGAGCTTCTGGTGAG 1497
||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1441 TGCAGTCCATCTTCCTACTATTCCTGCTTTGAGAAAGGAATATGGTGAGCTTCTGGTGAG 1500
Query 1498 TTGCGGTTTGGTTGGGGAAGCAATCACCATATTTGAGAGCCTGGAATTGTGGGATAATCT 1557
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1501 TTGCGGTTTGGTTGGGGAAGCAATCACAATATTTGAGAGCCTGGAACTGTGGGATAATCT 1560
Query 1558 AATCTACTGCTACTGCCTTCTGGGAAAGAAATCAGCAGCTGTAGATCTCATCAATGCACG 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 AATCTACTGCTACTGCCTTCTGGGAAAGAAATCAGCAGCTGTAGATCTCATCAATGCACG 1620
Query 1618 GCTTCTTGAACGGCCAAATGACCCAAGATTATGGTGTTCACTTGGTGATGTTACTATAAA 1677
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1621 GCTTGATGAACGGCCAAATGACCCAAGATTATGGTGTTCACTGGGTGATGTTACTATTAA 1680
Query 1678 TGATTCCTGTTATGAAAAAGCCCTGGAAGTTTCAAATGATAAGTCAGTTCGTGCTAAGCG 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TGATTCCTGTTATGAAAAAGCCCTGGAAGTTTCAAATGATAAGTCAGTTCGTGCTAAGCG 1740
Query 1738 CGCTCTTGCTCGCAGCGCATACAATCGCGGTGATTTTGAGAAGTCAAAGATGCTGTGGGA 1797
|||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1741 GGCTCTTGCACGCAGCGCCTACAATCGGGGTGATTTTGAGAAGTCGAAGATGCTGTGGGA 1800
Query 1798 GGCTGCAATGGCCTTAAATTCTCTGTACCCAGATGGTTGGTTTGCTCTTGGTGCTGCTGC 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 GGCTGCAATGGCCTTAAATTCTCTGTACCCAGATGGTTGGTTTGCTCTTGGTGCTGCTGC 1860
Query 1858 GTTGAAGGCCAGGGATGTTCAGAAAGCACTGGATGCATTCACTTTTGCTGTTCAACTTGA 1917
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 ATTGAAGGCCAGGGATGTTCAGAAAGCACTGGATGCATTCACTTTTGCTGTTCAACTTGA 1920
Query 1918 TCCCGACAATGGGGAGGCTTGGAACAACATTGCTTGTCTGCATATGATAAAGAAAAAGAG 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 TCCCGACAATGGGGAGGCTTGGAACAACATTGCTTGTCTGCATATGATAAAGAAAAAGAG 1980
Query 1978 CAAAGAATCATTCATTGCGTTCAAAGAAGCACTTAAATTCAAGCGAGATAGCTGGCAGAT 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 CAAAGAATCATTCATTGCGTTCAAAGAAGCACTTAAATTCAAGCGAGATAGCTGGCAGAT 2040
Query 2038 GTGGGAAAATTTCAGTCATGTCGCTATGGATGTGGGAAATATTGATCAGGCCTTTGAAGC 2097
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2041 GTGGGAGAATTTCAGTCATGTAGCTATGGATGTGGGAAATATTGATCAGGCCTTTGAAGC 2100
Query 2098 TATACAACAGATACTGAAAATGAGCAAAAACAAGAGGGTTGATGTTGTTTTATTGGACCG 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 TATACAACAGATACTGAAAATGAGCAAAAACAAGAGGGTTGATGTTGTTTTATTGGACCG 2160
Query 2158 TATAATGACAGAGTTAGAAAAGAGGAATTCAGCATGTAAGTCATCATCTTCATCGACTGA 2217
||||||||||||||||||||| ||||||||||||||||||||||| | | |||||| |||
Sbjct 2161 TATAATGACAGAGTTAGAAAATAGGAATTCAGCATGTAAGTCATC-T-T-CATCGATTGA 2217
Query 2218 AACCGAAGCTTCTTCAGATGAGTCAACAGAAACAAAACCATGTACTGCAACACCAGCTGA 2277
||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 2218 AACCGAAACTTCTTCAGATGAATCAGCAGAAACAAAACCATGTACTGCAACACCAGCTGA 2277
Query 2278 AACTCAACGCCAGCTAGAATTACTTGGGAAAGTTATTCAGCAGATTGTCAAAACAGAAAG 2337
|||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 2278 AACTCAACGCCAGCTAGAGTTGCTTGGGAAAATTATTCAGCAGATTGTCAAAACAGAAAG 2337
Query 2338 TACAGCAGAAATCTGGGGGTTATATGCAAGATGGAGTAGAATCAAAGGAGATCTTACGGT 2397
|||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2338 TACATCTGAAATCTGGGGATTATATGCAAGATGGAGTAGAATCAAAGGAGATCTTATGGT 2397
Query 2398 ATGCAGCGAGGCACTGTTAAAGCAAGTGCGATCATATCAGGGATCAGAAGTGTGGAAAGA 2457
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2398 ATGCAGCGAGGCACTGTTAAAGCAAGTGCGATCATATCAGGGATCAGAAGTTTGGAAAGA 2457
Query 2458 CAAAGAGCGTTTCAAGAAGTTTGCAAGAGCATCATTGGAACTTTGTAGAGTGTATATGGA 2517
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2458 CAAAGAGCGTTTCAAGAATTTTGCAAGAGCATCATTGGAACTTTGTAGAGTGTACATGGA 2517
Query 2518 GATCTCAGCT-TCCATAGGAAGCAAACGAGAACTGTTTACTGCTGAGATGCATTTGAAGA 2576
|||||||| | |||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2518 GATCTCAG-TGTCCACAGGAAGCAAACGAGAACTGTTTAGTGCTGAGATGCATTTGAAGA 2576
Query 2577 ACACAATCAAACAAGCTACAGTGAGCTTCTTGGACAGTGAAGAATTGAAGGAACTTGAAA 2636
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 2577 ACACAATCAAACAAGCTACAATGAGCTTCTTGGACACTGAAGAATTGAAGGAACTTGAAA 2636
Query 2637 GTTGCCTTGAGGAGGTAAGAAATGTCATGCAGAAAAGTGAAGAAGAGTA-TAGAGATACA 2695
|||||||||||||||| |||||||| |||||||| ||||| |||||| | |||| |||||
Sbjct 2637 GTTGCCTTGAGGAGGTGAGAAATGTAATGCAGAAGAGTGATGAAGAG-ACTAGAAATACA 2695
Query 2696 AAAACATGA 2704
|||| ||||
Sbjct 2696 AAAATATGA 2704
> Ahg893637 jgi|Araly1|893637|Al_scaffold_0006_1633
Length=2616
Score = 2591 bits (1403), Expect = 0.0
Identities = 1785/1962 (91%), Gaps = 56/1962 (3%)
Strand=Plus/Plus
Query 5 ATGGTCGACGGCGAAGTTGAAATCCTTCGCGGTTACGAGCTCCGTCTCCTCCGGTGCACT 64
||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct 1 ATGGTTGACGGCGAAGTTGAAACCCTTCGAGGTTATGAGCTCCGTCTCCTCCGGTGCACC 60
Query 65 GTATCCTTT-CCACAGA-CAGGTTCTCCTCTCGAATCCCAGCCGCTCGATGGAACTCAAT 122
|| | |||| |||| | ||| | | |||||||||||||| | || || | | |
Sbjct 61 GTCT-CTTTAACACA-ACCAGATCCCCCTCTCGAATCCCA---GTTC---GG-AGT---T 108
Query 123 CCGGAACCCATCCACACGACTCTCTTATAACGTCTCTTTTGTCTTCAATCGAGGCTGGAG 182
|||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 109 --------CATCCACACGACTCTCTTATAACGTCCCTTTTGTCTTCAATCGAGGCTGGAA 160
Query 183 ACTATCTTGGAGCTCTATCCTCCGACGCTACTAAGCTAATACTCGGAGATTCCGAGTTAA 242
||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 161 ACTATCTTGGAGCCCTAGCCTCCGACGCTACTAAGCTAATACTCGGCGATTCCGAGTTCG 220
Query 243 ACTTGGTTGA-TACGGTTGATTCCGCCGAGCAAGTTTACTCCGAGCTTCTCGACAAGGTC 301
|| |||| || | ||||||||||||| || | |||||| ||| |||||||||||||||||
Sbjct 221 ACCTGGTCGACT-CGGTTGATTCCGCTGAACGAGTTTATTCCCAGCTTCTCGACAAGGTC 279
Query 302 GAATCGTTCGTGGTGAACGATTCTTCAGATGAAATCGATAAGGCTCGCCGTGCTGTTCTG 361
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 280 GAATCGTTCGTGGTGAACGATTCGTCAGATGAAATCGACAAGGCTCGCCGTGCTGTTCTG 339
Query 362 GTGATGTGCTTAGCAATCGCTACTGCTTTGTGGTTCACCCGTTGCAATCTGACTGGGTCA 421
|||||||||||||||||||| |||||||||||||||| || |||||| |||| |||||
Sbjct 340 GTGATGTGCTTAGCAATCGCGGCTGCTTTGTGGTTCACTCGGTGCAATTTGACCGGGTCG 399
Query 422 ACGGAAGGATCAACGAAATGTTCGTTGCCCCTTAGAGTGTCAGAGAGTAAGGAATTAGTT 481
|||||||||||||| ||| ||| || || || | ||| || ||||||
Sbjct 400 ACGGAAGGATCAAC-AAA--TTC--TG-----TACCGT-T-------TAAAGATTTAGTT 441
Query 482 GAGTGGGAGAACTGGGCTAAGATTCAGCTCATGTCTGTC-GGTTCTGACTTGCTTGGGAA 540
|| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct 442 GAATGGGAGAACTGGGCTAAGATTCAGCTCATGTCTG-CAGGTTCTGACTTGCTCGGGAA 500
Query 541 GTTTTCTAATCTCCAGCATTTAGTTTTTGCTAGATTGCTCCTGTTCAAGTTGAAAGATTT 600
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 501 GTTTTCTAATCTCCAACATTTAGTTTTTGCTAGATTGCTTCTGTTAAAGTTGAAAGATTT 560
Query 601 GTTGTTTGAGATAACTTCAACTGAAACTTTTGAAGTAAGGAGTATTTCATGGTGGCTTGT 660
||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 561 GTTGTTTGAGACAACTGCAACTGAAACTTTTGAATTAAGGAGTATTTCATGGTGGCTTGT 620
Query 661 CAGAGTTTTACTGATTCATCAAAGAGTTCTACAAGAGCGATCTTCATCTTTGTTTGAAAT 720
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 621 CAGAGTTTTACTTATCCATCAAAGAGTTCTACACGAGCGATCTTCATCTTTGTTTGAGAT 680
Query 721 GTTGCAAGTTTACATGGCCGAAGCTATAGACCATTTTGGAGAATTGGAAAAAGTAAAAAG 780
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 681 GTTGCAAGTTTACATGGCCGAAGCTCTAGACCATTTTGGAGCATTGGAAAAAGTAAAAAG 740
Query 781 CTACTGGGGTGCCAATTTGCTAGAAGACGAAGCTTCATCCATCACGTCAACTATCCATCT 840
||||||||| |||| || ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 741 TTACTGGGGTTCCAAGTTACTAGAAGACGAAGCTTCATCCATTACGTCAACCATCCATCT 800
Query 841 GGAAGCATGTGTACTGCAATATATATATGGAAGGATTGATCCTTCACGGTTGCAGCTTGA 900
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 801 GGAAGCATGTGTACTGCAATATATATATGGAAGGATTGATCCTTCTCGGTTGCAGCTTGA 860
Query 901 ATCTGCTAAAGCAGCAGCAAGCCTAGAGTTCTCTGTTACCGGGGCTCTTGGATTTCGTAC 960
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 861 ATCTGCTAAAGCAGCAGCAGGGCTAGAGTTCTCTGTTACCGGGGCTCTTGGATTTCGTAC 920
Query 961 TATTCACCAAGTAGAT-CCAAAGGCACAGATGGTATTGGTAGCCAATACTAGCTCATCCA 1019
|||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 921 TATTCACCAAGTAG-TACCAAAGGCGCAGATGGTATTGGTAGCCAATACTAGCTCATCCA 979
Query 1020 ATGGGGATGTGAGGTTGGCCTCTGAGAAAGCTGATGTTGGACCTTATGAAGCTTGGGGAG 1079
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 980 ATGGGGATGTGAGGTTGGCCTCTGAGAAAGCTGATGTTGGACCTTATGGAGCTTGGGAAG 1039
Query 1080 GTGAAGCACCTGAAGTATATATGACTCCCAAACTAGTGAACAACGAGAGTGAAGCTGGCA 1139
||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1040 GTGAAACACCTCAAGTATTTATGACTCCCAAACTAGTGAACAACGAGAGTGAATCTGGCA 1099
Query 1140 AAGATTCTGTGCCCTTGAAACCAGTTGAACAGGCATTGATTTTGGCCCAGTGCCTTCTAA 1199
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AAGATTCTGTGCCCTTAAAACCAGTTGAACAGGCATTGATTTTGGCCCAGTGCCTTCTAA 1159
Query 1200 TTGAAAGGGGTAGTCGGCACGATG-AGATGCAAAGATGGGATATGGCTCCATATATTGAG 1258
|||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 1160 TTGAAAGGGGTAGTCGGCACGATGCA-ATGCAAAGTTGGGATATGGCTCCATATATTGAG 1218
Query 1259 GCAATAGATTCTCAAAAGTCAACATATTTTGTTCTACGGTGTTTTTGTGACTTACTACGT 1318
||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1219 GCAATTGATTCTCAAAAGTCAACATATTTTGTTCTACGGTGTTTTTGTGACTTATTGCGT 1278
Query 1319 GTTCGATGGGAATCAACTAGAGGTCGTACAAAGGGA-CGCGCCCTAGAGATGATGGATAA 1377
||||||||||||||| || || |||||||| |||| ||||||| || |||||||||||
Sbjct 1279 GTTCGATGGGAATCATCTCGATATCGTACAA-GGGAACGCGCCCGGGATATGATGGATAA 1337
Query 1378 ATTGGTTGGAGCTATTAACAAGAGCGATCCTGGAGTATCAAACAGGATCCCTTTATGCTA 1437
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1338 GCTGGTTGGAGCTATTAGCAAGAGCGATCCTGGAGTATCAAATAGGATCCCTTTATGCTA 1397
Query 1438 TGCTGTCCATCTTCCTACTATTCCTGCTCTGAGAAAGGAATACGGTGAGCTTCTGGTGAG 1497
||| || |||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1398 TGCAGTGTATCTTCCTACTATTCCTGCTTTGAGAAAGGAATATGGTGAGCTTCTGGTGAG 1457
Query 1498 TTGCGGTT-TGGTTGGGGAAGCAATCACCATATTTGAGAGCCTGGAATTGTGGGATAATC 1556
|||||||| || | |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1458 TTGCGGTTATGCT-GGGGAAGCAATCACAATATTTGAGAGCCTGGAACTGTGGGATAATC 1516
Query 1557 TAATCTACTGCTACTGCCTTC-TGGGAAAGAAATCAGCAGCTGTAGATCTCATCAATGCA 1615
|||| |||||||||||| | | || |||||||||||| |||||| |||||||||| |||
Sbjct 1517 TAATTTACTGCTACTGC-TCCATGCAAAAGAAATCAGCGGCTGTACATCTCATCAAAGCA 1575
Query 1616 CGGCTTCTTGAACGGCCAAATGACCCAAGATTATGGTGTTCACTTGG-TGATGTTACTAT 1674
||||||| |||||| ||||||||||||||||||| ||||||| |||| ||||||||| ||
Sbjct 1576 CGGCTTCATGAACGCCCAAATGACCCAAGATTATTGTGTTCA-TTGGGTGATGTTACGAT 1634
Query 1675 AAATGATTCCTGTTATGAAAAAGCCCTGGAAGTTTCAAATGATAAGTCAGTTCGTGCTAA 1734
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1635 TAACGATTCCTGTTATGAAAAAGCCCTGGAAGTTTCAAATGACAAGTCAGTTCGTGCTAA 1694
Query 1735 GCGCGCTCTTGCTCGCAGCGCATACAATCGCGGTGATTTTGAGAAGTCAAAGATGCTGTG 1794
||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1695 GCGGGCTCTTGCTCGCAGCGCCTACAATCGCGGTGATTTTGAGAAGTCGAAGATACTGTG 1754
Query 1795 GGAGGCTGCAATGGCCTTAAATTCTCTGTACCCAGATGGTTGGTTTGCTCTTGGTGCTGC 1854
||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1755 GGAGGCTGCAATGTCCTTGAATTCTCTGTATCCAGATGGTTGGTTTGCTCTTGGTACTGC 1814
Query 1855 TGCGTTGAAGGCCAGGGATGTTCAGAAAGCACTGGATGCATTCACTTTTGCTGTTCAACT 1914
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1815 TGCGTTGAAGGCCAGGGATGTTCAGAAAGCACTGGATGCATTCACTTTCGCTGTTCATCT 1874
Query 1915 TGATCCCGACAATGGGGAGGCTTGGAACAACATTGCTTGTCT 1956
|||||| |||||| || ||||||||||||||||||||| |||
Sbjct 1875 TGATCCTGACAATTGGCAGGCTTGGAACAACATTGCTTCTCT 1916
Score = 326 bits (176), Expect = 7e-88
Identities = 241/272 (89%), Gaps = 6/272 (2%)
Strand=Plus/Plus
Query 2435 CAGGGATCAGAAGTGTGGAAAGACAAAGAGCGTTTCAAGAAGTTTGCAAGAGCATCATTG 2494
|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 2335 CAGGGATCAGAAGTGTGGAAAGACGACGACCGTTTCAAGAAGTTTGCAAGAGCATCATTG 2394
Query 2495 GAACTTTGTAGAGTGTATATGGAGATCTCAGCT-TCCATAGGAAGCAAACGAGAACTGTT 2553
||||||||||||||||| |||||||| |||| | || | |||||||| ||||||||||||
Sbjct 2395 GAACTTTGTAGAGTGTACATGGAGATGTCAG-TGTCGACAGGAAGCAGACGAGAACTGTT 2453
Query 2554 TACTGCTGAGATGCATTTGAAGAACACAATCAAACAAGCTACAGTGAGCTTCTTGGACAG 2613
| |||||||||||||||||||||||||||||||||||||| || ||||||| ||| |
Sbjct 2454 GAGTGCTGAGATGCATTTGAAGAACACAATCAAACAAGCTAGAGAGAGCTTCCCGGATAC 2513
Query 2614 TGAAGAATTGAAGGAACTTGAAAGTTGCCTTGAGGAGGTAAGAAATGTCATGCAGAAAA- 2672
|| ||||||||| || ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 2514 TGCAGAATTGAAAGAGCTTGAAAGTTGCCTTGAGGAGGTGAGAAATGTTATGCAGAAGAC 2573
Query 2673 GTGAAGAAGAGTATA-GAGATACAAAAACATG 2703
| ||||| || || | || |||||||||||||
Sbjct 2574 G-GAAGA-GAATAGAAGAAATACAAAAACATG 2603
Score = 278 bits (150), Expect = 2e-73
Identities = 174/186 (94%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 2021 CGAGATAGCTGGCAGATGTGGGAAAATTTCAGTCATGTCGCTATGGATGTGGGAAATATT 2080
||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| |
Sbjct 1918 CGAGATAGCTGGCAGATATGGGAGAATTTCAGTCATGTAGCTATGGATGTGGGGAATACT 1977
Query 2081 GATCAGGCCTTTGAAGCTATACAACAGATACTGAAAATGAGCAAAAACAAGAGGGTTGAT 2140
||| |||| |||||||||||||||||| |||||||| ||||||||||||||| | |||||
Sbjct 1978 GATAAGGCTTTTGAAGCTATACAACAGGTACTGAAATTGAGCAAAAACAAGAAGATTGAT 2037
Query 2141 GTTGTTTTATTGGACCGTATAATGACAGAGTTAGAAAAGAGGAATTCAGCATGTAAGTCA 2200
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2038 GTTGTTTTATTGGACCGTATAATGACAGAGTTAGAAAATAGGAATTCAGCATGTAAGTCA 2097
Query 2201 TCATCT 2206
||||||
Sbjct 2098 TCATCT 2103
Score = 135 bits (73), Expect = 1e-30
Identities = 108/124 (87%), Gaps = 6/124 (5%)
Strand=Plus/Plus
Query 2200 ATCATCTTCATCGACTGAAACCGAAGCTTCTTCAGATG-AGTCAACAGAAACAAAACCA- 2257
|||||||| ||||| ||||| ||||||||||||||||| | | || ||||||||| ||
Sbjct 2217 ATCATCTTTATCGATTGAAATCGAAGCTTCTTCAGATGAACT-GACGGAAACAAAA-CAG 2274
Query 2258 TGTACTGCAACACCAGCTGAAACTCAACGCCAGCTAGAATTACTTGGG-AAAGTTATTCA 2316
||| |||||||||||||||||||||||||||| ||||| || |||||| ||| |||||||
Sbjct 2275 TGTGCTGCAACACCAGCTGAAACTCAACGCCACCTAGAGTTGCTTGGGGAAA-TTATTCA 2333
Query 2317 GCAG 2320
||||
Sbjct 2334 GCAG 2337
> Ahg915194 jgi|Araly1|915194|Al_scaffold_0009_163
Length=1140
Score = 121 bits (65), Expect = 3e-26
Identities = 85/94 (90%), Gaps = 4/94 (4%)
Strand=Plus/Plus
Query 459 TGT-CAGAGAGTA-AGGAATTAGTTGAGTGGGAGAACTGGGCTAAGATTCAGCTCATGTC 516
||| ||||||| | | ||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 255 TGTACAGAGAGAATATGAATTAGCTGAATGGGAGAACTGGGCTAAGATTCAGCTCATGTC 314
Query 517 TGTCGGTTCTGACTTGCTT-GGGAAGTTTTCTAA 549
||| |||||||||||| || ||||||||||||||
Sbjct 315 TGTAGGTTCTGACTTG-TTCGGGAAGTTTTCTAA 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102005676110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5