BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G17280.1

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488592 jgi|Araly1|488592|fgenesh2_kg.6__1726__AT5G17280.1         616    8e-176


> Ahg488592 jgi|Araly1|488592|fgenesh2_kg.6__1726__AT5G17280.1
Length=561

 Score =  616 bits (333),  Expect = 8e-176
 Identities = 484/552 (88%), Gaps = 29/552 (5%)
 Strand=Plus/Plus

Query  4    aaaaaaggaaatagaaaaaaaaaGAAGAGAACAAATCTTTTTGATCTGTGCGTATG-GT-  61
            ||||||||||||||     ||||| ||||  ||||||| |||||||||||| | || || 
Sbjct  1    AAAAAAGGAAATAG-----AAAAG-AGAGGCCAAATCTGTTTGATCTGTGCCTGTGCGTA  54

Query  62   T-GTTG-TGTCTCTTCTTCCTCGAATCTCGATCGTTACATCACCGGGTTCTAGCCTTCAC  119
            | |||| ||| || ||||| ||||||||||||||  ||||||||||||||||||||||||
Sbjct  55   TGGTTGTTGTGTC-TCTTCATCGAATCTCGATCGCCACATCACCGGGTTCTAGCCTTCAC  113

Query  120  GATGTGCTTTTGAGCATGAGATTTGGTTTGACGCG---ACATCTCCCTCTCAAACGATCT  176
            |||||||||||||||||||||||||| ||||||||   |||||||||| | || ||| ||
Sbjct  114  GATGTGCTTTTGAGCATGAGATTTGGATTGACGCGGCGACATCTCCCTTTGAAGCGACCT  173

Query  177  TTCTCCAATTATTCAATCACTTCCGTATCTCCAGAACAACAGCTCAAATCTCCGGTGACC  236
            ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct  174  TTCACCAATTATTCAATCACTTCCGTATCTCCAGAACAACAGCTCATATCGCCGGTGACC  233

Query  237  ATGGCGACGACCGAGAGC-AAGAATCTTGTAGAAGCTTCCAAGGAGGAGACAAACAAGAA  295
            |||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct  234  ATGGCGACGACCGAGAGCCAA-AATCTTGTACAAGCTTCCAAGGAGGAGACAAACAAGAA  292

Query  296  GGAGACAGAAGATAAGAAGGAGGTGGGAGTTTCGGTTCCTCCACCGCCAGAGAAACCAGA  355
            ||||  ||| |||| ||||||| |     ||| || |||||| ||||| |||||||||||
Sbjct  293  GGAGGTAGAGGATACGAAGGAGAT-----TTT-GGCTCCTCCGCCGCCGGAGAAACCAGA  346

Query  356  GCCTGGCGATTGTTGCGGTAGCGGTTGCGTCCGATGCGTTTGGGATGTTTATTACGATGA  415
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  347  GCCTGGCGATTGCTGCGGTAGCGGTTGCGTCCGATGCGTTTGGGATGTTTATTACGAAGA  406

Query  416  GCTCGAAGATTACAACAAGCAGCTTTCTGGAGAAACTAAATCAATTTGACTGATTTTTC-  474
            ||||||||||||||||||| ||||||||||||||||||||||  ||||||| | || || 
Sbjct  407  GCTCGAAGATTACAACAAGAAGCTTTCTGGAGAAACTAAATCCGTTTGACTTAATTGTCG  466

Query  475  C-TCGCATTGTTAATGGAGAAATTAAACATTTG--TCTTTGTCGATTTGATGATACAGTG  531
            | | |  ||||| ||||||||||||||||||||  |||||||| |||||||||| | |||
Sbjct  467  CATTG--TTGTTGATGGAGAAATTAAACATTTGCCTCTTTGTCTATTTGATGATTCTGTG  524

Query  532  CTTTTGTTGAAC  543
            |||| |||||||
Sbjct  525  CTTT-GTTGAAC  535



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21863152497


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5