BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17290.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941236 jgi|Araly1|941236|scaffold_601780.1 1652 0.0
> Ahg941236 jgi|Araly1|941236|scaffold_601780.1
Length=1054
Score = 1652 bits (894), Expect = 0.0
Identities = 1002/1055 (95%), Gaps = 4/1055 (0%)
Strand=Plus/Plus
Query 60 AAGGTGTGACGGGGAAGAGAATGGCGAAGGAAGCGGTCAAGTATGTATGGGAAGGAGCAA 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGGTGTGACGAGGAAGAGAATGGCGAAGGAAGCGGTCAAGTATGTATGGGAAGGAGCAA 60
Query 120 TTCCTCTGCAGAT-TCATCTCCACAAATCCGACGTCGCTTCTCACCCTGCTCCTCCTCCT 178
| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TACCTCTGCAGATAT-ATCTCCACAAATCCGACGTTGCTTCTCACCCTGCTCCTCCTCCT 119
Query 179 GCTCTTGTGTTAGCACCAAGAATAGGATATTTGCCTCTGTTGATTCCTCTTATAAAGCCT 238
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACTCTTGTATTAGCACCAAGAATAGGATATTTGCCTCTGTTGATTCCTCTTATAAAGCCT 179
Query 239 TATTTCAAGGATTCACTTCCTCCTGGTGAAGATTCAATTTGGTTTGATTACAAAGGATTT 298
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 180 TACTTCAAGGATTCACTTCCTCCTGGTGAAGATTCAATCTGGTTCGATTACAAAGGATTT 239
Query 299 CCTCTAAAATGGTATATACCAACAGGTGTTCTTTTCGATCTCCTTTGTGCAGAACCCGAA 358
||| | ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 240 CCTTTGAAATGGTATATACCAACTGGTGTTCTTTTCGATCTCCTTTGCGCAGAACCAGAA 299
Query 359 AGACCATGGAATCTCACGATACACTTTAGAGGATATCCTTGCAACATACTGATACCATGT 418
||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 300 AGACCTTGGAATCTGACGATACACTTTAGAGGATATCCTAGCAACATTCTGATACCATGT 359
Query 419 GAAGGAGAAGATTCTGTAAAATGGAACTTTGTTAATTCTTTGAAAGAGGCACAATATATC 478
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAGGGGAAGATTCCGTAAAATGGAACTTTGTTAATTCTTTGAAAGAGGCACAATATATC 419
Query 479 ATCAATGGAAATTGCAAGAATGTTATGAACATGTCTCAGAGTGATCAAGAGGATCTATGG 538
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 ATCAATGGAAATTGCAAGAATGTTATGAATATGTCTCAGAGTGATCAAGAGGATCTATGG 479
Query 539 ACCTCTGTCATGAACGGTGATCTTGATGCCTATACAAGATTATCACCCAAGCTTAAAATG 598
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 480 ACTTCTGTCATGAACGGTGATCTTGATGCATATACTAGATTATCACCCAAGCTTAAAATG 539
Query 599 GGAACAGTCGAAGATGAGTTTTCAAGGAAAACAAGTTTGTCATCTCCACAATCTCAACAA 658
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 540 GGAACAGTTGAAGATGAGTTTTCAAGGACAACAAGTTTGTCATCTCCACAATGTGGACAA 599
Query 659 GTTGTGCCTGAGACGGAGGTGGCTGGACAAGTTAAGACAGCAAGAATTCCTGTTCGGTTG 718
|||||| ||||||| || |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 600 GTTGTGGCTGAGACAGATGTGGCTGGTCAAGTTAAGACAGCAAGAATTCCTGTTCGGCTG 659
Query 719 TATGTTCGAAGTCTAAATAAAGATTTCGAGAATCTTGAAGATGTACCGGAGATCGATACC 778
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 TATGTTCGAAGTATAAATAAAGATTTTGAGAATCTTGAAGATGTACCGGAGATCGATACC 719
Query 779 TGGGATGACATCTCGTACCTTAATCGCCCTGTTGAGTTCCTCAAAGAAGAAGGGAAATGC 838
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 720 TGGGATGACATCTCGTACCTAAATCGCCCTGTTGAGTTCCTCAGAGAAGAAGGGAAATGC 779
Query 839 TTTACGTTACGTGACGCCATTAAAAGTCTCCTCCCTGAGTTTATGGGAGACAGAGCGCAA 898
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 780 TTTACCTTACGTGACGCCATTGAAAGTCTCCTCCCTGAGTTCATGGGAGACAGAGCGCAA 839
Query 899 ACGAGTGGTGAAGAAAGAAGCATAGATGATACAGAAGAAGCAGATGGGTCGAGGGAGATG 958
|||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||| |
Sbjct 840 ACGAGTGGAGAAGAAAGAAGCATGGATGATACAGAAGAAGAAGATGGTTCGAGGGAGACG 899
Query 959 GGTGAAATCAAATTGGTAAGGATACAAGGGATAGAAATGAAGCTAGAGATACCGTTTTCG 1018
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 900 GGTGAAATCAAATTGGTAAGGATCCAAGGGATAGAAATGAAGCTAGAGATACCGTTTTCG 959
Query 1019 TGGGTGGTAAATAACTTGATGAACCCAGAATTCTATCTCCATATCTCTGTCCTTGTGAAA 1078
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 960 TGGGTGGTAAATAACTTGATGAACCCAGAATTCTATCTCCATATCTGTGTTCTTGTGAAA 1019
Query 1079 GCTCCTCAAAGGTGAAGTGTAAGGTTCTCTGCAGT 1113
||||| |||||||||||| |||||||||||||||
Sbjct 1020 GCTCCACAAAGGTGAAGT--AAGGTTCTCTGCAGT 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5