BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17310.2
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941238 jgi|Araly1|941238|scaffold_601782.1 2344 0.0
Ahg477571 jgi|Araly1|477571|fgenesh2_kg.3__272__AT3G03250.1 1598 0.0
Ahg336820 jgi|Araly1|336820|fgenesh1_pg.C_scaffold_1003385 63.9 4e-09
> Ahg941238 jgi|Araly1|941238|scaffold_601782.1
Length=1453
Score = 2344 bits (1269), Expect = 0.0
Identities = 1397/1459 (96%), Gaps = 7/1459 (0%)
Strand=Plus/Plus
Query 55 TTTCTC-TCGGATTGAAATCATCCATGGCTGCCACCGCAACCGAGAAGCTCCCTCAGCTC 113
|||||| ||||| ||||||||||| | ||| ||||||| ||||||||||||||||||
Sbjct 1 TTTCTCATCGGA---AAATCATCCAT-G--GCCGCCGCAACGGAGAAGCTCCCTCAGCTC 54
Query 114 AAATCCGCCGTCGATGGACTTACTGAGATGAGCGAGAATGAGAAGAGTGGATTCATCAAC 173
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
Sbjct 55 AAATCCGCCGTCGATGGACTTACTGAGATGAGTGAGAATGAGAAGAGCGGATTCATCAGC 114
Query 174 CTCGTTTCACGTTACCTCAGTGGTGAAGCCCAGCACATTGAATGGAGCAAGATCCAGACA 233
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 115 CTCGTTTCACGTTACCTCAGTGGTGAGGCCCAACACATTGAATGGAGTAAGATCCAGACA 174
Query 234 CCTACTGATGAAATTGTTGTTCCTTATGATAAAATGGCTAACGTCTCTGAAGATGCTTCC 293
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 175 CCTACTGATGAAATTGTTGTTCCTTACGATAAAATGGCTAACGTCTCTCAAGATGCCACC 234
Query 294 GAGACCAAATATCTGTTGGACAAGCTTGTTGTGCTGAAGCTTAATGGAGGTTTGGGAACC 353
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 235 GAGACCAAATATCTGTTGGACAAGCTTGTTGTGCTAAAGCTTAATGGAGGTTTGGGAACG 294
Query 354 ACAATGGGATGCACTGGTCCAAAATCGGTTATTGAAGTTCGTGATGGTTTGACATTTCTT 413
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 295 ACAATGGGATGCACCGGTCCTAAATCGGTTATCGAAGTTCGTGATGGTTTGACATTTCTT 354
Query 414 GACCTGATTGTTATCCAGATTGAGAATCTCAACAACAAGTATAACTGCAAGGTTCCTTTG 473
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 355 GACCTGATTGTTATCCAGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCCTTG 414
Query 474 GTTCTTATGAACTCATTCAATACACATGATGACACACAAAAGATTGTGGAAAAATACACC 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTTCTTATGAACTCATTCAATACACATGATGACACACAAAAGATTGTGGAAAAATACACC 474
Query 534 AAGTCAAATGTTGATATTCACACTTTTAATCAGAGCAAGTATCCTCGTGTTGTTGCTGAT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AAGTCAAATGTTGATATTCACACTTTTAATCAGAGCAAGTATCCTCGTGTTGTTGCTGAT 534
Query 594 GAGTTTGTGCCGTGGCCAAGCAAAGGAAAGACTGACAAGGATGGATGGTATCCTCCCGGT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GAGTTTGTGCCGTGGCCAAGCAAAGGAAAGACTGACAAGGATGGATGGTATCCTCCCGGT 594
Query 654 CACGGTGATGTATTCCCATCTCTCATGAACAGTGGCAAGCTTGATGCGTTCTTATCACAG 713
|||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct 595 CACGGTGATGTATTCCCATCCCTCATGAACAGTGGAAAGCTCGATGCTTTCTTATCACAG 654
Query 714 GGTAAGGAGTATGTGTTCATCGCCAACTCAGACAACTTGGGCGCAATCGTTGACTTAAAA 773
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 655 AGTAAGGAGTATGTGTTCATCGCCAACTCAGACAACTTGGGCGCTATTGTTGACTTAAAA 714
Query 774 ATCTTGAAGCACCTGATCCAGAACAAAAATGAGTACTGTATGGAGGTTACACCCAAAACA 833
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 715 ATCTTGAAGCACCTGATCCAGAACAAAAATGAGTATTGTATGGAGGTTACACCCAAAACA 774
Query 834 CTAGCTGATGTAAAGGGAGGAACTCTCATTTCTTACGAAGGAAAAGTACAGCTTTTGGAG 893
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 775 CTAGCTGATGTAAAGGGAGGAACTCTCATCTCTTACGAAGGAAGAGTACAGCTTTTGGAG 834
Query 894 ATTGCTCAGGTTCCTGATGAACATGTAAATGAATTCAAATCAATTGAGAAATTCAAGATT 953
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 835 ATTGCTCAGGTTCCTGATGAACATGTCAATGAATTCAAATCAATTGAGAAATTCAAGATT 894
Query 954 TTCAACACCAACAACCTATGGGTGAACTTGAAAGCCATCAAAAAGCTTGTGGAAGCTGAT 1013
|||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 895 TTCAACACAAACAACCTTTGGGTTAACTTGAAAGCTATCAAAAAGCTTGTGGAAGCTGAT 954
Query 1014 GCACTTAAAATGGAGATCATCCCAAACCCGAAGGAAGTTGACGGAGTCAAAGTTCTTCAG 1073
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 955 GCACTTAAAATGGAGATCATCCCAAACCCGAAGGAAGTTGATGGAGTCAAAGTTCTTCAA 1014
Query 1074 CTGGAAACTGCAGCTGGTGCTGCGATAAGGTTTTTTGATAATGCAATTGGTGTGAATGTA 1133
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1015 CTGGAAACTGCAGCTGGTGCTGCTATAAGGTTTTTTGATAACGCAATCGGTGTGAATGTA 1074
Query 1134 CCTCGGTCACGGTTCTTGCCAGTGAAGGCAACTTCAGACTTGCTTCTTGTTCAATCGGAT 1193
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CCTCGGTCACGATTCTTGCCAGTGAAGGCAACTTCAGACTTGCTTCTTGTTCAATCGGAT 1134
Query 1194 CTGTACACACTCGTAGATGGCTTTGTCACAAGAAACAAAGCTAGAACAAACCCCACAAAC 1253
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1135 CTGTATACACTCGTCGATGGCTTTGTCATAAGAAACAAAGCTAGAACAAACCCCACAAAC 1194
Query 1254 CCAGCGATCGAGTTGGGACCCGAATTCAAAAAGGTAGCGAGTTTCCTTAGCCGGTTCAAG 1313
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1195 CCAGCGATCGAATTGGGACCCGAATTCAAAAAGGTAGCGAGCTTCCTTAGCCGGTTTAAG 1254
Query 1314 TCCATCCCGAGTATAGTTGAGCTCGATAGTCTTAAGGTCTCAGGTGATGTTTGGTTTGGC 1373
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1255 TCCATCCCGAGTATAGTTGAGCTCGATAGCCTTAAGGTCTCTGGTGATGTCTGGTTTGGC 1314
Query 1374 TCCGGCGTTGTTCTCAAGGGCAAAGTGACAGTAAAGGCAAACGCCGGGACTAAACTTGAA 1433
|| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1315 TCAGGCGTTGTTCTCAAGGGCAAAGTGTCAGTAAAGGCAAACTCCGGGACTAAACTTGAA 1374
Query 1434 ATCCCTGACAATGCCGTGCTCGAGAATAAGGACATCAACGGTCCAGAGGATCTGTGAAAA 1493
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1375 ATCCCTGACAATGCCGTGCTCGAGAATAAGGATATCAACGGTCCAGAGGATCTGTAAAAA 1434
Query 1494 AACTTAAAAGACTTACTTT 1512
|||||||||||||||||||
Sbjct 1435 AACTTAAAAGACTTACTTT 1453
> Ahg477571 jgi|Araly1|477571|fgenesh2_kg.3__272__AT3G03250.1
Length=1803
Score = 1598 bits (865), Expect = 0.0
Identities = 1247/1432 (87%), Gaps = 23/1432 (2%)
Strand=Plus/Plus
Query 70 AATCATCCATGGCTGCCACCGCAACCGAGAAGCTCCCTCAGCTCAAATCCGCCGTCGATG 129
||||| | ||||| |||| | | |||||||| |||||||| |||||||||||||||||||
Sbjct 114 AATCAACAATGGCCGCCA-C-C-ACCGAGAATCTCCCTCAACTCAAATCCGCCGTCGATG 170
Query 130 GACTTACTGAGATGAGCGAGAATGAGAAGAGTGGATTCATCAACCTCGTTTCACGTTACC 189
| ||| |||||||||| |||||||||||||| |||||||||| ||| |||||||||||||
Sbjct 171 GCCTTGCTGAGATGAGTGAGAATGAGAAGAGCGGATTCATCAGCCTTGTTTCACGTTACC 230
Query 190 TCAGTGGTGAAGCCCAGCACATTGAATGGAGCAAGATCCAGACACCTACTGATGAAATTG 249
| || ||||| || ||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 231 TGAGCGGTGAGGCACAGCACATTGAGTGGAGTAAGATCCAGACACCTACTGATGAAATCG 290
Query 250 TTGTTCCTTATGATAAAATGGCTAACGTCTCTGAAGATGCTTCCGAGACCAA-ATATCTG 308
||||||| || || ||||||||| |||||| |||||| |||||||||||| | |||||
Sbjct 291 TTGTTCCCTACGAGAAAATGGCTTCCGTCTCCCAAGATGTTTCCGAGACCAAGA-ATCTG 349
Query 309 TTGGACAAGCTTGTTGTGCTGAAGCTTAATGGAGGT-TTGGGAACCACAATGGGATGCAC 367
|||||||| ||||||||| | ||||||||||||||| ||||| || ||||||||||||||
Sbjct 350 TTGGACAAACTTGTTGTGTTAAAGCTTAATGGAGGTCTTGGG-ACAACAATGGGATGCAC 408
Query 368 TGGTCCAAAATCGGTTATTGAAGTTCGTGATGGTTTGACATTTCTTGACCTGATTGTTAT 427
||| || || |||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 409 TGGCCCCAAGTCGGTTATCGAAGTTCGTGACGGTTTGACATTTCTTGATCTGATTGTTAT 468
Query 428 CCAGATTGAGAATCTCAACAACAAGTATAACTGCAAGGTTCCTTTGGTTCTTATGAACTC 487
|||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 469 CCAGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCGTTGGTTCTCATGAACTC 528
Query 488 ATTCAATACACATGATGACACACAAAAGATTGTGGAAAAATACACCAAGTCAAATGTTGA 547
||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 529 ATTTAATACACATGATGACACACAAAAGATTGTGGAAAAGTACACCCACTCAAATGTTGA 588
Query 548 TATTCACACTTTTAATCAGAGCAAGTATCCTCGTGTTGTTGCTGATGAGTTTGTGCCGTG 607
|||||||| ||||| |||||||| ||||| |||||||| || |||||||||||||| ||
Sbjct 589 CATTCACACATTTAACCAGAGCAAATATCCCCGTGTTGTGGCAGATGAGTTTGTGCCATG 648
Query 608 GCCAAGCAAAGGAAAGACTGACAAGGATGGATGGTATCCTCCCGGTCACGGTGATGTATT 667
||| ||||| |||||||| |||||||| || ||||||||||| ||||| |||||||||||
Sbjct 649 GCCCAGCAAGGGAAAGACCGACAAGGAGGGCTGGTATCCTCCTGGTCATGGTGATGTATT 708
Query 668 CCCATCTCTCATGAACAGTGGCAAGCTTGATGCGTTCTTATCACAGGGTAAGGAGTATGT 727
|||| | |||||||||||||| ||||| ||| | |||||||||||||||||||| || ||
Sbjct 709 CCCAGCCCTCATGAACAGTGGAAAGCTCGATACTTTCTTATCACAGGGTAAGGAATACGT 768
Query 728 GTTCATCGCCAACTCAGACAACTTGGGCGCAATCGTTGACTTAAAAATCTTGAAGCACCT 787
||| | ||||| |||||||||||||| || ||||||||||||| |||| ||||||| |
Sbjct 769 GTTTGTTGCCAATTCAGACAACTTGGGTGCCATCGTTGACTTAACAATCCTGAAGCATTT 828
Query 788 GATCCAGAACAAAAATGAGTACTGTATGGAGGTTACACCCAAAACAC-TAGCTGATGTAA 846
|||||||||||| || |||||||| ||||| ||||| |||||||| | ||||||||||||
Sbjct 829 GATCCAGAACAAGAACGAGTACTGCATGGAAGTTACGCCCAAAAC-CTTAGCTGATGTAA 887
Query 847 AGGGAGGAACTCTCATTTCTTACGAAGGAAAAGTACAGCTTTTGGAGATTGCTCAGGTTC 906
|||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||
Sbjct 888 AGGGAGGAACTCTCATTTCTTATGAAGGCAAAGTCCAGCTTCTGGAGATTGCTCAGGTTC 947
Query 907 CTGATGAACATGTAAATGAATTCAAATCAATTGAGAAATTCAAGATTTTCAACACCAACA 966
| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 948 CGGATGAACATGTCAATGAATTCAAATCAATTGAGAAGTTCAAGATATTCAACACAAACA 1007
Query 967 ACCTATGGGTGAACTTGAAAGCCATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGG 1026
|| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 ACTTATGGGTTAACTTGAAGGCCATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGG 1067
Query 1027 AGATCATCCCAAACCCGAAGGAAGTTGACGGAGTCAAAGTTCTTCAGCTGGAAACTGCAG 1086
||||||| |||||||| ||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 1068 AGATCATTCCAAACCCAAAGGAAGTTGATGGAGTCAAAATTCTTCAACTGGAAACTGCAG 1127
Query 1087 CTGGTGCTGCGATAAGGTTTTTTGATAATGCAATTGGTGTGAATGTACCTCGGTCACGGT 1146
||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||||
Sbjct 1128 CTGGTGCTGCGATAAGGTTCTTTGACAATGCTATCGGTGTTAATGTACCTCGTTCACGGT 1187
Query 1147 TCTTGCCAGTGAAGGCAA-CTTCAGACTTGCTTCTTGTTCAATCGGATCTGTACACACTC 1205
|||||||||||||||||| || |||||||||| || || || || ||||| ||||| |
Sbjct 1188 TCTTGCCAGTGAAGGCAAGCT-CAGACTTGCTGCTCGTCCAGTCTGATCTCTACACGTTA 1246
Query 1206 GTAGATGGCTTTGTCACAAGAAACAAAGCTAGAACAAACCCCACAAACCCAGCGATCGAG 1265
|| |||||||| || || |||||||||||||||| |||||| |||||||| | || ||
Sbjct 1247 GTTGATGGCTTCGTTACCCGAAACAAAGCTAGAACTAACCCCTCAAACCCATCAATTGAA 1306
Query 1266 TTGGGACCCGAATTCAAAAAGGTAGCGAGTTTCCTT-AGCCGGTTCAAGTCCATCCCGAG 1324
|||||||| || ||||| ||||| || | |||| || |||||||| |||||||| || ||
Sbjct 1307 TTGGGACCTGAGTTCAAGAAGGTGGCTAATTTC-TTGAGCCGGTTTAAGTCCATTCCTAG 1365
Query 1325 TATAGTTGAGCTCGATAGTCTTAAGGTCTCAGGTGATGTTTGGTTTGGCTC--CGGCGTT 1382
|||||| |||||||| || |||||||| || || ||||| ||||||||||| ||| ||
Sbjct 1366 TATAGTCGAGCTCGACAGCCTTAAGGTGTCTGGGGATGTCTGGTTTGGCTCTTCGG--TT 1423
Query 1383 GTTCTCAAGGGCAAAG-TGACAGTAAAGGCAAACGCCGG-GACTAAA-CTTGAAATCCCT 1439
||||||||||| |||| | || || | ||||| |||| | | || || ||||| ||
Sbjct 1424 GTTCTCAAGGG-AAAGGTAACTGTGACTGCAAAATCCGGTG--TGAAGCTCGAAATTCCG 1480
Query 1440 GACAATGCCGTGCTCGAGAATAAGGACATCAACGGTCCAGAGGATCTGTGAA 1491
|||| |||||| |||| || ||| ||||||| |||||||| || || ||||
Sbjct 1481 GACAGGGCCGTGGTCGACAACAAGAACATCAATGGTCCAGAAGACCTCTGAA 1532
> Ahg336820 jgi|Araly1|336820|fgenesh1_pg.C_scaffold_1003385
Length=537
Score = 63.9 bits (34), Expect = 4e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 884 GCTTTTGGAGATTGCTCAGGTTCCTGATGAACAT 917
||||||||||||||||||||||||||||||||||
Sbjct 179 GCTTTTGGAGATTGCTCAGGTTCCTGATGAACAT 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5