BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17330.1
Length=1874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488599 jgi|Araly1|488599|fgenesh2_kg.6__1733__AT5G17330.1 2739 0.0
Ahg925737 jgi|Araly1|925737|scaffold_201298.1 869 0.0
> Ahg488599 jgi|Araly1|488599|fgenesh2_kg.6__1733__AT5G17330.1
Length=1744
Score = 2739 bits (1483), Expect = 0.0
Identities = 1669/1757 (95%), Gaps = 20/1757 (1%)
Strand=Plus/Plus
Query 1 TTGATTATTGATATAAAAC-CCATATAAAGGTGTCTCTCATCATCCTCC---ATTCCCAT 56
||||||||||||||||||| || ||| |||||||||||| || |||||| ||||||||
Sbjct 1 TTGATTATTGATATAAAACACC-TAT-AAGGTGTCTCTCTTCTTCCTCCATTATTCCCAT 58
Query 57 ACATCACTTTCctcgatctcactttctctctcttatcatcatctcctggtattctctctc 116
||||||||||||||||||||||||| |||||| ||||||||||| ||||| | ||||
Sbjct 59 TCATCACTTTCCTCGATCTCACTTTCCCTCTCTCATCATCATCTCTTGGTA---T-TCTC 114
Query 117 tctcatctcCGTGATGGTGCTCTCCCACGCCGTATCGGAGTCGGACGTCTCCGTCCACTC 176
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 115 TCTCATCGCCGTGATGGTGCTCTCCCACGCCGCATCGGAGTCGGATGTCTCCGTCCACTC 174
Query 177 CACATTCGCATCACGTTACGTCCGTACTTCACTTCCTAGGTTCAAGATGCCGGAAAACTC 236
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 175 CACATTCGCATCACGTTACGTCCGTACTTCACTTCCTAGGTTCAAGATGCCTGAAAACTC 234
Query 237 GATTCCTAAGGAAGCGGCGTATCAGATCATCAACGACGAGCTGATGCTTGACGGGAATCC 296
||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 235 GATACCGAAAGAAGCGGCGTATCAGATTATCAACGACGAGCTGATGCTTGACGGGAATCC 294
Query 297 ACGGTTGAACTTAGCCTCCTTT-GTGACGACATGGATGGAGCCTGAGTGTGATAAACTCA 355
||| || ||||| |||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 295 ACGCTTAAACTTGGCCT-CTTTCGTGACGACGTGGATGGAGCCTGAGTGTGATAAACTCA 353
Query 356 TCATGTCCTCCATCAACAAGAACTATGTTGACATGGACGAGTACCCCGTCACCACCGAAC 415
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TCATGTCCTCCATTAACAAGAACTATGTTGACATGGACGAGTACCCCGTCACCACCGAAC 413
Query 416 TTCAGAACCGATGTGTGAACATGATTGCACATCTATTCAATGCACCGTTAGAAGAGGCGG 475
| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 414 TCCAGAATCGATGTGTGAACATGATTGCACATCTATTCAATGCACCGTTAGGAGAGACGG 473
Query 476 AGACCGCCGTCGGAGTAGGAACCGTTGGATCATCGGAGGCCATAATGTTGGCCGGTTTGG 535
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AGACAGCCGTCGGAGTGGGAACCGTTGGATCATCGGAGGCCATAATGTTGGCCGGTTTGG 533
Query 536 CCTTCAAGCGTAAATGGCAGAACAAGCGCAAAGCTGAAGGCAAACCCGTCGATAAACCCA 595
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 534 CCTTCAAGCGTAAATGGCAGAACAAGCGCAAAGCCGAAGGCAAACCCGTCGATAAACCCA 593
Query 596 ACATTGTCACCGGAGCCAATGTTCAAGTGTGTTGGGAGAAATTCGCTAGGTACTTTGAGG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 ACATTGTCACCGGAGCCAATGTTCAAGTGTGTTGGGAGAAATTCGCTAGGTACTTTGAGG 653
Query 656 TTGAACTTAAGGAAGTGAAATTGAGTGAAGGATACTATGTGATGGACCCTCAACAAGCTG 715
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 654 TTGAACTTAAGGAAGTGAAATTGAGTGAAGGATACTATGTGATGGACCCGCAAAAAGCTG 713
Query 716 TTGATATGGTTGATGAGAACACCATTTGTGTTGCGGCCATTCTTGGTTCCACTCTTAATG 775
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 714 TTGATATGGTTGATGAGAACACTATTTGTGTTGCGGCCATTCTTGGTTCCACTCTTAATG 773
Query 776 GAGAATTCGAAGATGTTAAACTCTTGAACGATCTCTTGGTCGAAAAGAACAAAGAAACCG 835
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 774 GAGAATTTGAAGATGTCAAACTCTTGAACGATCTCTTGGTTGAAAAGAACAAAGAAACCG 833
Query 836 GATGGGATACACCAATCCACGTGGATGCGGCAAGTGGAGGATTCATTGCACCGTTTTTGT 895
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 834 GATGGGATACACCAATCCACGTGGATGCCGCAAGTGGAGGATTCATTGCACCGTTTTTGT 893
Query 896 ATCCGGAATTGGAATGGGACTTTAGACTTCCCTTGGTGAAGAGTATCAATGTGAGTGGTC 955
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 894 ATCCGGAACTGGAATGGGACTTTAGACTGCCATTGGTGAAGAGTATCAATGTGAGTGGTC 953
Query 956 ACAAGTATGGACTTGTGTACGCAGGGATTGGTTGGGTGATCTGGAGAAACAAAGAGGATT 1015
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 954 ACAAGTATGGACTTGTGTACGCAGGAATTGGTTGGGTGATTTGGAGAAACAAAGAGGATT 1013
Query 1016 TGCCTGAGGAACTCATCTTCCATATCAATTATCTTGGTGCTGACCAACCCACCTTTACTC 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1014 TGCCTGAGGAACTCATCTTCCATATCAATTATCTTGGTGCTGACCAACCCACGTTTACTC 1073
Query 1076 TCAATTTCTCCAAAGGTTCAAGTCAAGTCATTGCTCAATACTACCAACTTATCCGATTGG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TCAATTTCTCCAAAGGTTCAAGTCAAGTCATTGCTCAATACTACCAACTTATCCGATTGG 1133
Query 1136 GCCACGAGGGTTACAGAAATGTGATGGAGAATTGCAGAGAGAATATGATCGTCCTAAGGG 1195
||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1134 GCCACGAGGGTTATACAAATGTGATGGAGAATTGCAGAGAGAATATGATCGTGCTAAGGA 1193
Query 1196 AAGGACTTGAGAAGACAGAAAGGTTCAACATCGTCTCAAAGGACGAGGGAGTGCCACTTG 1255
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1194 AAGGACTTGAGAAGACAGAAAGGTTCAACATCGTATCAAAGGACGAGGGAGTGCCACTTG 1253
Query 1256 TCGCTTTCTCCTTGAAAGATAGCAGCTGTCACACTGAGTTCGAAATCTCCGACATGCTTC 1315
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1254 TCGCTTTCTCCTTGAAAGATAACAGCTCTCACACTGAGTTCGAAATCTCCGACATGCTTC 1313
Query 1316 GCAGGTATGGATGGATAGTGCCGGCCTACACAATGCCTCCAAATGCACAACACATCACTG 1375
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1314 GCAGGTATGGATGGATAGTGCCGGCCTATACAATGCCTCCAGATGCACAACACATCACTG 1373
Query 1376 TTCTTCGTGTGGTTATCAGAGAAGATTTCTCGAGAACACTCGCTGAGAGACTTGTGATCG 1435
||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1374 TTCTTCGAGTAGTTATCAGAGAAGATTTCTCGAGAACACTTGCAGAGAGACTTGTGATCG 1433
Query 1436 ATATAGAGAAAGTGATGCGTGAGCTCGATGAGCTTCCTTCGAGAGTGATTCACAAAATAT 1495
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1434 ATATAGAGAAAGTGATGCGTGAGCTCGATGAGCTTCCTTCTAGAGTGATTCACAAAATAT 1493
Query 1496 CACTTGGACAAGAGAAGAGTGAATCTAACAGCGATAACTTGATGGTCACGGTGAAGAAGA 1555
|||| |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 1494 CACTCGGACAAGAGAAGAGTGAAGCTAACAGCGATAACGTGATGGTGACGGTGAAGAAGA 1553
Query 1556 GCGATATCGACAAGCAGAGAGATATCATCACTGGCTGGAAGAAGTTTGTCGCCGACAGGA 1615
||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1554 GCGATGTCGAGAAGCAGAGAGATATCATCATTGGCTGGAAGAAGTTTGTCGCCGACAGGA 1613
Query 1616 AGAAGACGAGTGGTATCTGCTAATCGAAATATATTTACTTCAAA-TGTTTGAAGACTTTT 1674
||||||| ||||||||||| |||||||| ||| || |||| ||| | ||||||||||||
Sbjct 1614 AGAAGACCAGTGGTATCTGTTAATCGAA-TAT-TT-ACTTGAAAATATTTGAAGACTTT- 1669
Query 1675 ATTAA-TAATGCATAATTGCATTGATTTGGATATTTGAATGTTTCATTCCCCTTTATCGC 1733
||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1670 ATTAAATAATGCAT--TTGCATTGATTTGGATATTTGAATGTTTCATTTCCCTTTATTGT 1727
Query 1734 TGAACCAAGTTTCATTT 1750
|||||||| ||||||||
Sbjct 1728 TGAACCAAATTTCATTT 1744
> Ahg925737 jgi|Araly1|925737|scaffold_201298.1
Length=1530
Score = 869 bits (470), Expect = 0.0
Identities = 1009/1266 (80%), Gaps = 50/1266 (4%)
Strand=Plus/Plus
Query 235 TCGATTCCTAAGGAAGCGGCGTATCAGATCATCAACGACGAGCTGATGCTTGACGGGAAT 294
||||| || || || || || ||||||||||| || || |||||||||||||| || ||
Sbjct 128 TCGATACCGAAAGACGCTGCCTATCAGATCATAAAAGATGAGCTGATGCTTGATGGTAAC 187
Query 295 CC-ACGG-TTGAACTTAGCCTCCTTTGTGACGACATGGATGGAGCCTGAGTGTGATAAAC 352
|| | || || ||| |||| || |||||||| ||||||||||| || |||||||| ||||
Sbjct 188 CCGA-GGCTT-AACCTAGCTTCGTTTGTGACTACATGGATGGAACCAGAGTGTGACAAAC 245
Query 353 TCATCATGTCCTCCATCAACAAGAACTATGTTGACATGGACGAGTACCCCGTCACCACCG 412
|||||||| ||| ||||| |||||||| ||||| ||||| |||||||| ||||| || |
Sbjct 246 TCATCATGGACTCTATCAATAAGAACTACGTTGATATGGATGAGTACCCTGTCACAACTG 305
Query 413 AACTTCAGAACCGATGTGTGAACATGATTGCAC-ATCTATTCAATGCACC-GTTAGAAGA 470
| |||||||||||||||| ||||| || || | | || |||||||| || | | | ||
Sbjct 306 AGTTTCAGAACCGATGTGTAAACATTATAGCTCGA-CTGTTCAATGCGCCACTCA-AGGA 363
Query 471 GGCGGAGACCGCCGTCGGAGTAGGAACCGTTGGATCATCGGAGGCCATAATGTTGGCCGG 530
| ||||| || || |||||||| || ||||| || || || ||||| ||||| |||||
Sbjct 364 ATCTGAGACTGCGGTGGGAGTAGGGACAGTTGGTTCTTCAGAAGCCATCATGTTAGCCGG 423
Query 531 TTTGGCCTTCAAGCGTAAATGGCAGAACAAG-CGCAAAGCTGAAGGCAAACCCGT-CGAT 588
||||||||||| | |||||||| ||| || ||||| ||||| || |||||| | ||
Sbjct 424 ATTGGCCTTCAAAAGAAAATGGCAAAAC-AGACGCAAGGCTGAGGGTAAACCC-TATGAC 481
Query 589 AAACCCAACATTGTCACCGGAGCCAATGTTCAAGTGTGTTGGGAGAAATTCGCTAGGTAC 648
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 482 AAACCCAACATTGTCACCGGAGCCAATGTTCAAGTGTGCTGGGAGAAATTCGCTCGGTAC 541
Query 649 TTTGAGGTTGAACTTAAGGAAGTGAAAT-TGAGTGAAGGATACTATGTGATGGACCCTCA 707
|| ||||| || || || || || ||| | |||||||| ||||| |||||||| || |
Sbjct 542 TTCGAGGTGGAGCTAAAAGAGGT-AAAGCTAAGTGAAGGTTACTACGTGATGGATCCAGA 600
Query 708 ACAA-GCTGTTGATATGGTTGATGAGAACACCATTTGTGTTGCGGCCATTCTTGGTTCCA 766
||| || | || ||||| || |||||||| || ||||| |||||||||||||| ||||
Sbjct 601 -CAAAGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCGGCCATTCTTGGGTCCA 659
Query 767 CTCTTAATGGAGAATTCGAAGATGTTAAAC-TCTTGAACGATCT--CTTGGTCGA-AAAG 822
| || ||||| || |||||||| || || | ||| || || || || |||| | |||
Sbjct 660 CACTCAATGGTGAGTTCGAAGACGTGAAGCGTCTC-AATGA-CTTGCT-GGTCAAGAAA- 715
Query 823 AACAAAGAAACCGGATGGGATACACCAATCCACGTGGATGCGGCAAGTGGAGGATTCATT 882
|| | || || || ||| | ||||| |||||||| ||||| ||||||||||| |||||
Sbjct 716 AATGAGGAGACTGGTTGGAACACACCGATCCACGTAGATGCAGCAAGTGGAGGGTTCATA 775
Query 883 GCACCGTTTTTGTATCCGGAATTGGAATGGGACTTTAGACTTCCCTTGGTGAAGAGTATC 942
|| || ||| | ||||| |||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 776 GCTCCATTTATCTATCCTGAATTGGAATGGGACTTTAGACTTCCTTTGGTTAAGAGCATC 835
Query 943 AATGTGAGTGGTCACAAGTATGGACTTGTGTACGCAGGGATTGGTTGGGT-GATCTGGAG 1001
|| |||||||||||||||||||||||||| || || || ||||||||||| | | |||||
Sbjct 836 AACGTGAGTGGTCACAAGTATGGACTTGTCTATGCTGGTATTGGTTGGGTCG-TGTGGAG 894
Query 1002 AAACAA-AGAGGATTTGCCTGAGGAACTCATCTTCCATATCAATTATCTTGGTGCTGACC 1060
|| ||||||||||||||| || || ||||| ||||| || ||||||||| |||| |
Sbjct 895 GG-CATCAGAGGATTTGCCTGAAGAGCTTATCTTTCATATTAACTATCTTGGTTCTGATC 953
Query 1061 AACCCACCTTT-ACTCTCAATTTCTCCAAAGGTTCAAGTCAAGTCATTGCTCAATACTAC 1119
||||||| ||| ||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct 954 AACCCAC-TTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTAT 1012
Query 1120 CAACTTATCCGA-TTGGGCCACGAGGGTTACA-GAAATGTGATGGAGAATTGCAGAGAGA 1177
||||| || || ||||| |||||| |||| ||| ||||||||||||||||| |||||
Sbjct 1013 CAACTCATTCGTCTTGGGTT-CGAGGGGTACAAGAA-TGTGATGGAGAATTGCATAGAGA 1070
Query 1178 ATATGATCGTCCT-AAGGGAAGG-ACTTGAGAAGACAGAAAGGTTCAACATCGTCTCAAA 1235
| ||| | || || || | |||| | | ||||| ||||| | |||||||| || || ||
Sbjct 1071 ACATGGTGGTTCTCAAAG-AAGGGA-TAGAGAAAACAGAGCGTTTCAACATAGTTTCCAA 1128
Query 1236 GGACGAGGGAGTGCCACTTGTCGCTTTCTC-CTTGAAAGAT-AGCAGCTGTC-ACA-CTG 1291
|||| | ||||||||| | || || ||||| || || || | || | || ||| | |
Sbjct 1129 GGACCAAGGAGTGCCAGTCGTAGCCTTCTCTCTC-AAGGACCAT-AGTT-TCCACAAC-G 1184
Query 1292 AGTTCGAAATCTCCGACATGCTTCGCAGGTATGGATGGATAGTGCCGGCCTACACAATGC 1351
||||||| ||||| || ||||| ||| | | ||||||||| || ||||| ||||| ||||
Sbjct 1185 AGTTCGAGATCTCTGAGATGCTACGCCGTTTTGGATGGATCGTCCCGGCTTACACTATGC 1244
Query 1352 CTCCAAATGCACAACACATCACTGTTCTTCGTGTGGTTATCAGAGAAGATTTCTCGAGAA 1411
|| | |||| ||||||||||| ||||| ||||| || ||||| ||||||||||| ||||
Sbjct 1245 CTGCGGATGCGCAACACATCACGGTTCTACGTGTTGTCATCAGGGAAGATTTCTCAAGAA 1304
Query 1412 CACTCGCTGAGAGACTTGT-GATCGATATAGAGAAAGTGATGCGTGAGCTCGATGAGCTT 1470
||||||| || |||||||| | ||||||| | ||| ||| | | ||||| ||| | |||
Sbjct 1305 CACTCGCGGAAAGACTTGTAG-TCGATATTGTGAAGGTGCTTCACGAGCTAGAT-ACCTT 1362
Query 1471 -CCTTC 1475
|||||
Sbjct 1363 GCCTTC 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70390772760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5