BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17340.1
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941241 jgi|Araly1|941241|scaffold_601785.1 797 0.0
> Ahg941241 jgi|Araly1|941241|scaffold_601785.1
Length=523
Score = 797 bits (431), Expect = 0.0
Identities = 488/516 (95%), Gaps = 2/516 (0%)
Strand=Plus/Plus
Query 39 AAAAATCCAAAAATGAAGAATCTCGCAATTCTTGTTGTTGCCATGATACTCTTCTCAAGC 98
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 9 AAAAATCCAAAAATGAAGAATCTCGCAATTCTTGTTGTTGCCATGATACTCTTCACAAGC 68
Query 99 TGTGTCACATCTCAAGTCACAGCAAAAAATGTGGATTCATTTCCATTACGTACTGAAGAG 158
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 69 TGTGTCACATCTCAAGTCACAGCAAAAAATGTAGATTCATTTCCATTACGTACTGAAGAG 128
Query 159 CTCGAATGGTGGCATTACAATCCTTTCTACCCTCACTTTTACCCTAAGCCACATTGGCCA 218
|||||||||||||||||| ||| |||||||||||||| | ||||||||||||||||||||
Sbjct 129 CTCGAATGGTGGCATTACCATCATTTCTACCCTCACTATCACCCTAAGCCACATTGGCCA 188
Query 219 TTCCCCACCACCGGAAAGGCTCTCCCACCAATCCCAGCCGGCTTCCACCCGATTCCATTC 278
||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 189 TTCCCCACCACCGGAAAGGCTCTCCCACCAATCCCGGCCGGCTTCCACCCTATCCCATTT 248
Query 279 CATCCACCACCGGTTGTAACCAAATGCTTGGCCGATTGCAAGGATGTAAAAACATGT-TT 337
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 249 CATCCACCACCGGTTGTAACCAAATGCTTGGCCGATTGCAAGGATGTAAGAACATGTGTT 308
Query 338 GGCGGATATCGCTAAAGCTTTCTTCACCCGCAAACCAGCTATTGGATTGGATTGTTGCGC 397
| |||||||||||| |||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 309 G-CGGATATCGCTATAGCTTTCTTCACGCGCAAACCCGCTATTGGATTGGATTGTTGTGC 367
Query 398 CTCCATCCAGAAGATGGATGAAGATTGTGATAAGACTGTCTTTGGAGCCTACCACAACCC 457
||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 368 CTCTATCCAGAAGATGGATGAAGATTGTGACAAGACTGTTTTTGGAGCGTACCACAACCC 427
Query 458 TTTCTTTGACTGTGTGGTTAAGCTTCATTGCTCTACCAAAGCTAAATCCACTCCGTCTGC 517
||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 428 TTTCTTTGACTGTTTGGTTAAGCTTCATTGCTCTACCAAAGCTAAATCCACTCCTTCCGC 487
Query 518 TCCCACTCCAGCTTAGGGTTTTAATTAGGAATTTAT 553
||| | ||||||||||||||| |||||||||||||
Sbjct 488 TCCTTCGCCAGCTTAGGGTTTTTATTAGGAATTTAT 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23636208540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5