BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17350.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488600 jgi|Araly1|488600|fgenesh2_kg.6__1734__AT5G17350.1 922 0.0
> Ahg488600 jgi|Araly1|488600|fgenesh2_kg.6__1734__AT5G17350.1
Length=735
Score = 922 bits (499), Expect = 0.0
Identities = 609/659 (92%), Gaps = 19/659 (3%)
Strand=Plus/Plus
Query 8 AAACAAACAAAACTTCTTCATACCTTTTGCTTGCTCCTACAATCTCTCCTTGAATCCGAA 67
|||||||||||||||||||||| | || ||||||| |||||||||||| |||| || |
Sbjct 2 AAACAAACAAAACTTCTTCATAGC--TT--TTGCTCCAACAATCTCTCCTCGAATTCG-A 56
Query 68 TCTTTCTTCA-TATAATGGGAAACTATGTTTCTTCTGCACTAAGCAAAA---CGTC-T-- 120
|||||||||| | ||||||||||||| |||||||| || |||||||||| |||| |
Sbjct 57 TCTTTCTTCACT-TAATGGGAAACTACGTTTCTTCCGCTCTAAGCAAAACGTCGTCGTCG 115
Query 121 TCATCATCATCATCGGCGGCGAAAGTGATTCTCCCCGACGGTGGAGTACGTAACATTCAC 180
|| || ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 116 TCTTCTTCATCATCGGCGGCGAAAGTGATTCTCCCGGACGGTGGAGTGCGTCACATTCAC 175
Query 181 GCGCCGATGAAAGCTGCCGAGCTTATGATGGAGATTCCAAGCTTCTTCCTCGTCGACGCA 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GCGCCGATGAAAGCCGCCGAGCTTATGATGGAGATTCCAAGCTTCTTCCTCGTCGACGCT 235
Query 241 AAGTCTTTAAAGATCGGTCGGAAGTTTTGTCCGTTAGCCGCCGATGACGACCTTCAAATC 300
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 236 AAGTCGTTAAAGATCGGCCGGAAGTTTTGTCCGTTAGCAGCCGATGACGACCTTCAAATC 295
Query 301 AAAGGCTGCCACGTGTACGTAGCTTTCCCTATGACGCGTGCCACGTCAGCTGCTAATGCT 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 296 AAAGGCTGCCACGTGTACGTAGCTTTTCCTATGACGCGTGCCACGTCAGCTGCTAATGCT 355
Query 361 TCGGATTTGGCTCGGTTATTCGTAGCTGCTAAGAAACAGCGCCGCCACCGCGTGGGAAGT 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 356 TCGGATTTGGCTCGGTTATTCGTAGCTGCTAAGAAACAGCGCCGCC---GCGTGGGAAGT 412
Query 421 GATCATTCTTCCGCCGCCGTGAAACACTGTCATAATAACGGAAGGGTTTCGCCGGACGGG 480
| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GCTCATTCTTCCGGCGCTGTGAAACACTGTCATAATAACGGAAGGGTTTCGCCGGACGGG 472
Query 481 GAAGGA-GATGACGTCAAGGTGATTTCAGCGGGATCAAAGCTGAACCTAGAAGATATCGA 539
|| ||| |||||||||| |||||| || ||||||||||||||||| |||||||||| ||
Sbjct 473 GA-GGAAGATGACGTCAGGGTGATATCGGCGGGATCAAAGCTGAATTTAGAAGATATTGA 531
Query 540 AGAGTTTTCGGCGGCGGAGTTTATGCATAGGATCTCAGTTTCGAAATCTAAGAAACCAAA 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AGAGTTCTCGGCGGCGGAGTTTATGCATAGGATCTCAGTTTCGAAATCTAAGAAACCAAA 591
Query 600 ATTAGAAACTATAGTTGAAGAATCTTTGTCTTAAAACTAAAAATGAAatttcatttttc 658
||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 592 GTTAGAAACTATAGCTGAAGAATCTTTGTCTTAAA-CAAAAAATGAAATTTCATTTTTC 649
Score = 76.8 bits (41), Expect = 2e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 716 TGGCTTCTCTTTTGTGGTATTAATGAACAGAAAGAGACATTATTCGA 762
||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 650 TGGTTTCTCTTTTGTGGTATTAATGAACAGAAAGAGACATTAGTCGA 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5