BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17360.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941243 jgi|Araly1|941243|scaffold_601787.1 797 0.0
> Ahg941243 jgi|Araly1|941243|scaffold_601787.1
Length=568
Score = 797 bits (431), Expect = 0.0
Identities = 510/549 (93%), Gaps = 2/549 (0%)
Strand=Plus/Plus
Query 245 ATGGGTGATCAAAGTATATCTAATAAGCCTCTGGATGAGAAGGTTTCAATGGATTTGACT 304
||||||||| ||| | | ||| |||||||||||||||||||||||| |||||||||||
Sbjct 21 ATGGGTGATGAAAATCTTTCTGGCAAGCCTCTGGATGAGAAGGTTTCATTGGATTTGACT 80
Query 305 TGTGGTCAGGAGGCGATTTTGGAAGAGCTTAGGATTTGTTTACCCAAATGGGTTACACAA 364
|||||| |||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 81 TGTGGTAAGGAGGAGATTTTGGAAGAGCTTAGGATTTGTTTGCCTAAATGGGTTACACAA 140
Query 365 GAACAAGTCACAGATATGATTAGAGGGACATGTAGGAATATAGTCGAAATTGTTGATAAT 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GAACAAGTAACAGATATGATTAGAGGGACATGTAGGAATATAGTCGAAATTGTTGATAAT 200
Query 425 TTTTACGAGCACGAGACTAAATTCTATGAGCAAGTTTCTGCTGTTATATCTTTCACTTCT 484
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 201 TTTTATGAGCACGAGACTAAATTCTATGAGCAAGTCTCTGCTGTTATATCTTTCACTTCT 260
Query 485 AGAGATGGAATTAGTTCGAGTAACCACGATGCATTTGTTTCGAAACTGGAGTTTATTCAC 544
|||||||| |||| |||| | |||||||| | | ||||||||||||||||||||||||||
Sbjct 261 AGAGATGGGATTAATTCGTGCAACCACGAAGAACTTGTTTCGAAACTGGAGTTTATTCAC 320
Query 545 TGTGAAACAGAGCGGAGTGAAAGTTGTCAGCCATCGCAGTTTCACAAGCTTAAGAGCATG 604
|||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||
Sbjct 321 TGTGAAACCGAGCGGAGTGAAAGTTGTCAGCCATTGCAGTTTCCCAAGCTTAAGAGTATG 380
Query 605 AGTAGTTCACAGAAGAGCAGTATTTCTCCTGTGAAGAGGAACAGAAAGATTAAAGGTAAA 664
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 381 AGTAGTTCTCAGAAGAGCAGCATTTCTCCTGTGAAGAGGAACAGAAAGATAAAAGGTAAA 440
Query 665 CCAAAGAAGAAAGGAAAAGCTTCTTCTAAGGTAGAATCTGGAGGCCCAAAGCAAGCTTCA 724
|||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct 441 CCAAAGAAGAAAGGAAAAGCTTGTTCTAAGGTTGAATCTGTAGGCCCAAAGCAAGCTTCA 500
Query 725 ATAACTAAATTCTTCAACAAAGTTTCTTCAGAAGGAACCAAG-TCTTAGGAGGCTAAATA 783
|||||||||||||||||||||||| ||||||| | ||||||| | ||||||||||||| |
Sbjct 501 ATAACTAAATTCTTCAACAAAGTTCCTTCAGATGAAACCAAGGT-TTAGGAGGCTAAAGA 559
Query 784 AGCGTATTT 792
|| ||||||
Sbjct 560 AGTGTATTT 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5