BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17370.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488602 jgi|Araly1|488602|fgenesh2_kg.6__1736__AT5G17370.1 1055 0.0
> Ahg488602 jgi|Araly1|488602|fgenesh2_kg.6__1736__AT5G17370.1
Length=1422
Score = 1055 bits (571), Expect = 0.0
Identities = 633/662 (96%), Gaps = 8/662 (1%)
Strand=Plus/Plus
Query 19 GAACACAGAGAACAGAGTCGACTCCAAGTCCGACACAACATGAAACCAGAACTTCCTGGG 78
||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1 GAACAGAGAGAACAGAGTCGA---C---TCCGACACAACATGAAACCAGAACTTCCTGGG 54
Query 79 TTTTATTACGACGAGGAGAAGAACAGATATTTTCCCATTAAAGGTCCTATCCCTGGTGCA 138
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 55 TTTTATTACGACGAGGAGAAGAACAGATATTTCCCCATTAAAGGTCCTATTCCTGGGGCA 114
Query 139 AAGTCTTCTTCTTCTTCAAGAACGAAACAAAAACCCGAGCCAAAGCCTGAACAGGAAACT 198
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 115 AAGTCTTCGTCTTCTTCAAGAACGAAACAAAAACCCGAACCAAAGCCTGAACAGGAAACT 174
Query 199 AATTATCAGAAGAGGACTAAACTAAAAGCATTGAAGCTAGTTTATTCCCGAGAGTTAAAT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 AATTATCAGAAGAGGACTAAACTAAAAGCATTGAAGCTAGTTTATTCCCGAGAGTTAAAT 234
Query 259 GGCAATGTTATTTCTGTCAACAAGAAGATGTCTAACTTCAGGGACGAGATTCAAAAGACA 318
|||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 235 GGCAATGTTATTCCTGTCAATAAGAAGATGTCTAACTTCAAGGACGAGATTCAAAAGACA 294
Query 319 CAAGCTTCTTATCCTGTGGTATGGAGATACGGATCCACAGAAGACATTGGCGATACCGCT 378
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 295 CAAGCTTCTTATCCTGTGGTATGGAGATACGGATCCACAGAAGACATAGGCGATACTGCT 354
Query 379 TTGAAACAGTTTCAGGTTGATGTACAAACACCTGTAGGCTTGACCAGAAAGAACATCCTA 438
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 355 TTGAAACAGTTTCAGGTTGATGTACAAACATCTGTAGGCTTGACCAGAAAGAACATCCTA 414
Query 439 GTAGCAGGCAGTGCTGGTGGTTGCTTGAGCATTCTAAGAGTTTCCAAAGATAGACAAGTA 498
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 415 GTAGCAGGCAGTGCTGGTGGTTGTTTGAGCATTCTAAGAGTTTCCAAAGATAGACAAGTA 474
Query 499 TACGATGGTGTAATCGAGTGTGATCCAGTTTCTGTTCTTCCTTGCAAAGAAAACGATACA 558
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 475 TACGATGGTGTAATCGAGTGTGATCCAGTTTCTGTTCTTCCTCGCAAAGAAAACGATACA 534
Query 559 GAAGAGA-GGGAAGCACCTGAGCATATATTGAGACCTACGCAACCTTGTCTGGTCGCCTT 617
||||| | |||||||||||||| |||||| || |||| ||||||||||||||||||||||
Sbjct 535 GAAGA-ACGGGAAGCACCTGAGTATATATGGAAACCTGCGCAACCTTGTCTGGTCGCCTT 593
Query 618 ATCTTCTATATCTTCTATTGAGTTAATCGGAAGATCTGATGCATCTGAAAACTCCCACCC 677
|||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 594 ATCTACTATATCTTCTATTGAGTTAATTGGAAGATCTGATGCATGTGAAAACTCCCACCC 653
Query 678 CG 679
||
Sbjct 654 CG 655
Score = 664 bits (359), Expect = 0.0
Identities = 408/430 (95%), Gaps = 9/430 (2%)
Strand=Plus/Plus
Query 1164 GCTCCAAGGAAACATAAACCCGTCTCATGTAATCTATATGCCGTCATCTCTTACATGCCT 1223
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 999 GCTCCAAGGAAACATAAACCCGTCTCATGTAATCTATATGCCGTCATCTGTTACATGCCT 1058
Query 1224 GAAGACACTAAAAACTTCTGATCAATACTTAATGGCAAGCTCCATGGATGGAACAATCAA 1283
|||||||||||||||||||||||| |||||||||||||||||||||||||| || | |
Sbjct 1059 GAAGACACTAAAAACTTCTGATCAGTACTTAATGGCAAGCTCCATGGATGG---AA-C-A 1113
Query 1284 GCTATACGATCAACGCATGGTTAAGAGAGGGGTCGGTGTACAGACATATGAAGGACATGT 1343
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1114 -CTATACGATCAACGCATGGTTAAAAGAGGGGTCGGTGTACAGACATATGAAGGACATGT 1172
Query 1344 AAATTCTCATACTCCCATCGAATTTGGCATCGACCCGTCAGAAAGATTTATTTTGTCAGG 1403
|||||||||||||| ||| ||||||||||| |||||||||||||||||| || |||||||
Sbjct 1173 AAATTCTCATACTCGCATTGAATTTGGCATTGACCCGTCAGAAAGATTTCTTATGTCAGG 1232
Query 1404 AGGAGATGACTGCTATACTCGCATTTGGAGTATCAAATCTGGTCAACTTATGTCTGAAAA 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 AGGAGATGACTGCTATACTCGCATTTGGAGTATCAAATCTGGTCAACTTATGTCTGAAAA 1292
Query 1464 TAAATTCTCCAACTCTGTCCCTTCAGTTGTGTGTTGGTCTGCTGATGAAAGACAAAGAGA 1523
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1293 TAAATTCTCCAACTCTGTCCCTTCAGTTGTGTGTTGGTCTACTGATGAAAGACAAAGAGA 1352
Query 1524 CCG---GAAAGATAGCATTGGTCACGGGGCATGGCTTGGATCACGCGAAGCGATATTCAA 1580
|| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1353 CCACCAGAAAGATAGCATTGGTCATGGGGCATGGCTTGGATCTCGCGAAGCAATATTCAA 1412
Query 1581 CTTGTTGTAA 1590
||||||||||
Sbjct 1413 CTTGTTGTAA 1422
Score = 412 bits (223), Expect = 3e-114
Identities = 247/259 (95%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 751 GAAGTGAACATACTTACTCCGCGAAGCCTCCAAGGGAATGTTTCCTCTGAGTGTACCATT 810
|||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 655 GAAGTGAACATACTTATTACGCGAAGCCTCCAAGGGAATGTTTCCTCTGAATGTACCATT 714
Query 811 TGGACATCTGATTGCAATATAAGTGGGAGTCATGCAGCTATTGGTACCGACTTAGGAGCT 870
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGGACAGCTGATTGCAATATAAGTGGGAGTCATGCAGCTATTGGTACCGACTTAGGAGCT 774
Query 871 GGTTTGGTTGATTTGGAAACAGGAGTAGGTTCATACTTTCTTCGAAGCAAAAGCGATGTT 930
| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 775 GCTTTGGTTGATTTGGAAACAGGAAAAGGTTCATACTTTCTCCGAAGCAAAAGCGATGTT 834
Query 931 TTTGCTCTACAATTTCATCAATCGGGAAACATTGTTCATTGCGGACTCAGAAATGGAGCC 990
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTTACGCTACAATTTCATCAATCGGGAAACATTGTTCATTGCGGACTCAGAAATGGAGCC 894
Query 991 ATTGTGTCAGTTGATCTAC 1009
||||||||||| ||| |||
Sbjct 895 ATTGTGTCAGTGGATTTAC 913
Score = 102 bits (55), Expect = 8e-21
Identities = 63/67 (94%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 1047 ACACCAGATACGATATCAATCATCGAGTAAAACCGGTCTAACTTCTACAAAGAAACAATG 1106
||||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||
Sbjct 914 ACACCAGATACGATATCAATCATCGAGTAAAACTGGTCAAACTACTACAAATAAACAATG 973
Query 1107 GTTCGAG 1113
|||||||
Sbjct 974 GTTCGAG 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5