BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17390.1 Length=858 Score E Sequences producing significant alignments: (Bits) Value Ahg893650 jgi|Araly1|893650|Al_scaffold_0006_1646 1382 0.0 > Ahg893650 jgi|Araly1|893650|Al_scaffold_0006_1646 Length=861 Score = 1382 bits (748), Expect = 0.0 Identities = 824/861 (96%), Gaps = 3/861 (0%) Strand=Plus/Plus Query 1 ATGGCGAGATCGCTCAAGAAATCAGCCAAGTTGAGTCTAAGAAGAGTCCGGATCAATTCA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGAGATCGCTCAAGAAATCAGCCAAGTTGAGTCTAAGAAGAGTCCGGATCAATTCA 60 Query 61 CCTTCGATTAGGTTCAAACCGGACTCGAGTTCCATAGAGAGAGACCAAAGAATCGAGTTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCTTCGATTAGGTTCAAACCGGACTCGAGTTCCATAGAGAGAGACCAAAGAATCGAGTTT 120 Query 121 CTAGGCGAAAATGGTGATGATGCCGGATCCGGagaagaagacaccaaagaagcaaacaat 180 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 121 CTAGGCGAAAATGGTGATGATGCCGGATCCGGAGAAGAAGAAACCAAAGAAGAAAACAAT 180 Query 181 gaaagtgaagaggttgaagataaggaagaagaaa---gagtcaaagtaattgtagaggag 237 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 181 GAAAGTGAAGAGGTTGAAGACAAGGAAGAAGAAATAAGAGTCAAAGTAATTGTAGAGGAG 240 Query 238 gaagaagaaaaagaacaagaTGATGCCAAGAGCTTTAACATTGGAGGCGGAGAAGGaaaa 297 |||||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct 241 GAAGAAGAGAAAGAACAAGATGATGGCAAGAGCTTTAACAATGGATGCGGAGAAGGAAAA 300 Query 298 aaaGAGGCGGTGGCAGCGGTTGAGGCGGTTGAGGAGGAGGCGGAAGGCGGGAATAGAGTA 357 |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 AAAGAGGCCGTGGCAGCAGTTGAGGCGGTTGAGGAGGAGGCGGAAGGCGGGAACAGAGTA 360 Query 358 ATGGTGGTGGTTGATAAAGCGCTTGCTTCTACCGGAGCTTTAGAATGGGCTATTACGCAT 417 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATGGTGGTGGTAGATAAAGCGCTTGCTTCTACCGGAGCTTTAGAATGGGCTATTACGCAT 420 Query 418 ACTTTACAACCACAAGACACTCTTTTTCTGTTATACTTTGCAAAACCGTTTAGAAAAAGT 477 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ACTTTACAACCACAAGACACTCTTTTTCTGTTATACTTTGCAAAACCGTTTAGAAAAAGC 480 Query 478 AAAAGGAAGAACCGAAAACGCGAGGTGAAAACCGATGAATTGGTCCATACTTTAAAGAAA 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 481 AAAAGGAAGAACCGAAAACGCGAGGTGAAAACCGATGAATTGGTCCATACTTTGAAGAAA 540 Query 538 CTGTGCCAAACGAAACGACCCGGGATAGAAGTGGAGATAAGGAGGTTAGAGGGGAAAGAC 597 ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 541 CTGTGCCAAACAAAACGTCCCGGGATAGAAGTGGAGATAAGGAGGTTAGAAGGGAAAGAC 600 Query 598 AAAGACAAAGGGCAGAAGATAGTTGAAGAATCAAAGAAACAACAAGTGAGCCTTTTAGTG 657 ||||||||||| || ||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 601 AAAGACAAAGGACAAAAGATAGTTGAAGAAGCAAAGAAACAAGAAGTGAGCCTTTTAGTG 660 Query 658 GTTGGACAAGAGAAGAAACCTCCGGTCTGGAGGCTATTGAAGAGATGGGCGTGGAAGAGA 717 |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 661 GTTGGACAAGAGAAGAAACCTCCGGTGTGGAGGCTTTTGAAGAGATGGGCATGGAAGAGA 720 Query 718 CGCCGTGGACACGAAGGTGTTCTCAAATACTGCCTCGAAAACGCCTCTTGCATGACAATC 777 ||||||||||||| |||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct 721 CGCCGTGGACACGGAGGTGTTCTCAAATACTGTCTCGAAAATGCCTCCTGCATGACAATT 780 Query 778 GCGGTTAAACCCAAGAACCGCAAGCTCGGCGGTTACTTAATCACCACCAAACGCCACAAA 837 || ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| Sbjct 781 GCAGTTAAACCCAAGAACCGCAGGCTCGGTGGTTACTTAATCACCACCAAACGACACAAA 840 Query 838 AACTTCTGGCTTCTCGCTTGA 858 ||||||||||| || |||||| Sbjct 841 AACTTCTGGCTCCTAGCTTGA 861 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31756389861 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5