BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17390.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893650 jgi|Araly1|893650|Al_scaffold_0006_1646 1382 0.0
> Ahg893650 jgi|Araly1|893650|Al_scaffold_0006_1646
Length=861
Score = 1382 bits (748), Expect = 0.0
Identities = 824/861 (96%), Gaps = 3/861 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGATCGCTCAAGAAATCAGCCAAGTTGAGTCTAAGAAGAGTCCGGATCAATTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGATCGCTCAAGAAATCAGCCAAGTTGAGTCTAAGAAGAGTCCGGATCAATTCA 60
Query 61 CCTTCGATTAGGTTCAAACCGGACTCGAGTTCCATAGAGAGAGACCAAAGAATCGAGTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTCGATTAGGTTCAAACCGGACTCGAGTTCCATAGAGAGAGACCAAAGAATCGAGTTT 120
Query 121 CTAGGCGAAAATGGTGATGATGCCGGATCCGGagaagaagacaccaaagaagcaaacaat 180
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 121 CTAGGCGAAAATGGTGATGATGCCGGATCCGGAGAAGAAGAAACCAAAGAAGAAAACAAT 180
Query 181 gaaagtgaagaggttgaagataaggaagaagaaa---gagtcaaagtaattgtagaggag 237
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 181 GAAAGTGAAGAGGTTGAAGACAAGGAAGAAGAAATAAGAGTCAAAGTAATTGTAGAGGAG 240
Query 238 gaagaagaaaaagaacaagaTGATGCCAAGAGCTTTAACATTGGAGGCGGAGAAGGaaaa 297
|||||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||
Sbjct 241 GAAGAAGAGAAAGAACAAGATGATGGCAAGAGCTTTAACAATGGATGCGGAGAAGGAAAA 300
Query 298 aaaGAGGCGGTGGCAGCGGTTGAGGCGGTTGAGGAGGAGGCGGAAGGCGGGAATAGAGTA 357
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 AAAGAGGCCGTGGCAGCAGTTGAGGCGGTTGAGGAGGAGGCGGAAGGCGGGAACAGAGTA 360
Query 358 ATGGTGGTGGTTGATAAAGCGCTTGCTTCTACCGGAGCTTTAGAATGGGCTATTACGCAT 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGGTGGTGGTAGATAAAGCGCTTGCTTCTACCGGAGCTTTAGAATGGGCTATTACGCAT 420
Query 418 ACTTTACAACCACAAGACACTCTTTTTCTGTTATACTTTGCAAAACCGTTTAGAAAAAGT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTTACAACCACAAGACACTCTTTTTCTGTTATACTTTGCAAAACCGTTTAGAAAAAGC 480
Query 478 AAAAGGAAGAACCGAAAACGCGAGGTGAAAACCGATGAATTGGTCCATACTTTAAAGAAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AAAAGGAAGAACCGAAAACGCGAGGTGAAAACCGATGAATTGGTCCATACTTTGAAGAAA 540
Query 538 CTGTGCCAAACGAAACGACCCGGGATAGAAGTGGAGATAAGGAGGTTAGAGGGGAAAGAC 597
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 CTGTGCCAAACAAAACGTCCCGGGATAGAAGTGGAGATAAGGAGGTTAGAAGGGAAAGAC 600
Query 598 AAAGACAAAGGGCAGAAGATAGTTGAAGAATCAAAGAAACAACAAGTGAGCCTTTTAGTG 657
||||||||||| || ||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 601 AAAGACAAAGGACAAAAGATAGTTGAAGAAGCAAAGAAACAAGAAGTGAGCCTTTTAGTG 660
Query 658 GTTGGACAAGAGAAGAAACCTCCGGTCTGGAGGCTATTGAAGAGATGGGCGTGGAAGAGA 717
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 661 GTTGGACAAGAGAAGAAACCTCCGGTGTGGAGGCTTTTGAAGAGATGGGCATGGAAGAGA 720
Query 718 CGCCGTGGACACGAAGGTGTTCTCAAATACTGCCTCGAAAACGCCTCTTGCATGACAATC 777
||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 721 CGCCGTGGACACGGAGGTGTTCTCAAATACTGTCTCGAAAATGCCTCCTGCATGACAATT 780
Query 778 GCGGTTAAACCCAAGAACCGCAAGCTCGGCGGTTACTTAATCACCACCAAACGCCACAAA 837
|| ||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||
Sbjct 781 GCAGTTAAACCCAAGAACCGCAGGCTCGGTGGTTACTTAATCACCACCAAACGACACAAA 840
Query 838 AACTTCTGGCTTCTCGCTTGA 858
||||||||||| || ||||||
Sbjct 841 AACTTCTGGCTCCTAGCTTGA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5