BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17400.1 Length=1296 Score E Sequences producing significant alignments: (Bits) Value Ahg488605 jgi|Araly1|488605|fgenesh2_kg.6__1739__AT5G17400.1 1694 0.0 > Ahg488605 jgi|Araly1|488605|fgenesh2_kg.6__1739__AT5G17400.1 Length=1120 Score = 1694 bits (917), Expect = 0.0 Identities = 1058/1126 (94%), Gaps = 10/1126 (1%) Strand=Plus/Plus Query 29 AACGAAATCGCCTCCTCTTCTTCTCCTCCTCGACCTGGAAATCAATCTTTCGCCGCCGAG 88 ||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||| Sbjct 1 AACGAAATCGCTTCCTCTTCTTCTCCTCGACCACCTGGAAATCAATCTTTTGCCGCCGAG 60 Query 89 TTCTTCTCTCTGCGGCGGAGAATCAATTAGCAATCTCCAGAATTAGGTGAGGG-AAAAGA 147 |||||||||||||||| | |||||| ||||||||||||||||||||||| ||| |||||| Sbjct 61 TTCTTCTCTCTGCGGC-G-GAATCATTTAGCAATCTCCAGAATTAGGTG-GGGAAAAAGA 117 Query 148 GGATGGCTTTGATCGGAAAATCCGAGAGATTCTCTGCTGATTTTGTGATGGGTGGTGCTG 207 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 GGATGGCTTTGGTCGGAAAATCCGAGAGATTCTCTGCTGATTTTGTGATGGGTGGTGCTG 177 Query 208 CAGCCATTGTTGCCAAATCTGCAGCTGCTCCAATCGAAAGGGTGAAGCTTTTACTGCAGA 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 CAGCCATTGTTGCCAAATCTGCAGCTGCTCCAATCGAAAGGGTGAAGCTTTTACTGCAGA 237 Query 268 ATCAAGGGGAGATGATAAAGACTGGACATCTCATAAGACCTTACACTGGTTTGGGTAATT 327 ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 238 ATCAAGGAGAGATGATAAAGACAGGACATCTAATAAGACCTTACACTGGTTTGGGTAATT 297 Query 328 GCTTTACCAGAATCTATAGAGAAGAAGGTGTTTTGTCCTTTTGGAGAGGAAACCAAGCCA 387 ||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 298 GCTTTGCCAGAATCTTTAGAGAAGAAGGTGTTTTGTCCTTTTGGAGAGGAAATCAAGCCA 357 Query 388 ATGTCATACGATATTTCCCTACACAGGCTTCCAACTTTGCATTTAAAGGTTACTTCAAGA 447 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 ATGTCATTCGATATTTCCCTACACAGGCTTCCAACTTTGCATTTAAAGGTTACTTCAAGA 417 Query 448 ACCTTCTTGGATGTTCGAAAGAGAAAGATGGTTACTTGAAGTGGTTTGCTGGAAATGTAG 507 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 418 ACCTTCTCGGATGTTCGAAAGAGAAAGATGGTTACTTGAAGTGGTTTGCTGGAAACGTAG 477 Query 508 CTTCGGGAAGTGCTGCTGGAGCAACAACTTCCTTGTTTCTGTACCATTTGGATTATGCGC 567 |||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 478 CTTCAGGAAGCGCTGCTGGAGCAACAACTTCCTTGTTTCTGTACCATCTGGATTATGCGC 537 Query 568 GGACCCGTTTAGGCACTGATGCAAAGGAATGTTCTGTTAATGGCAAGAGACAGTTTAAAG 627 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 538 GGACCCGTTTAGGCACTGATGCAAAGGAGTGTTCTGTTAATGGCAAGAGACAGTTTAAAG 597 Query 628 GGATGATCGATGTGTATCGTAAAACTTTGTCAAGTGACGGTATTAAAGGTCTTTACCGTG 687 ||||||| |||| |||||||||||| ||||| || || ||||||||||| |||||||||| Sbjct 598 GGATGATTGATGAGTATCGTAAAACATTGTCGAGCGATGGTATTAAAGGCCTTTACCGTG 657 Query 688 GATTTGGTGTGTCAATAGTGGGAATCACTCTTTACCGAGGAATGTATTTTGGGATGTACG 747 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 658 GATTTGGCGTGTCAATAGTGGGAATCACTCTGTACCGAGGAATGTATTTTGGGATGTACG 717 Query 748 ACACCATCAAACCCATTGTGT-TAGTCGGTTCCTTAGAGGGAAACTTCTTGGCTAGTTTT 806 | ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| Sbjct 718 ATACCATCAAACCCATTGT-TCTAGTCGGTTCCTTAGAGGGAAACTTCTTGGCTAGCTTT 776 Query 807 CTATTGGGTTGGAGTATTACTACCTCTGCAGGCGTCATTGCTTACCCTTTTGACACACTT 866 |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 777 CTATTGGGTTGGAGCATTACTACCTCTGCAGGAGTCATTGCTTATCCTTTTGACACGCTT 836 Query 867 AGGAGGAGAATGATGCTTACATCAGGACAACCTGTTAAATACCGGAACACCATTCATGCC 926 ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| Sbjct 837 AGGAGGAGAATGATGCTTACATCAGGACAACCTGTAAAATACCGGAATGCTATTCACGCC 896 Query 927 TTAAGAGAGATATTGAAGTCGGAAGGGTTCTATGCGCTATATAGAGGAGTTACTGCGAAC 986 |||| ||||||| |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 897 TTAACAGAGATAATGAAATCAGAAGGGTTCTATGCGCTATATAGAGGAGTTACTGCGAAC 956 Query 987 ATGCTTCTTGGAGTAGCAGGAGCAGGAGTGCTTGC-GGGATATGATCAGCTTCACCAGAT 1045 ||||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||| ||| Sbjct 957 ATGCTTCTTGGAGTAGCAGGAGCGGGAGTTCTTGCAGGG-TATGATCAGCTTCACTTGAT 1015 Query 1046 TGCTTATAAGCATTGGGTTCAGTAGTTTTGGACCAAACCCGAAACGATGACAATGAAAGC 1105 |||||||||||||||||||||||||||||| | |||| | ||||| || ||||||||| | Sbjct 1016 TGCTTATAAGCATTGGGTTCAGTAGTTTTGAATCAAATCAGAAACTATTACAATGAAAAC 1075 Query 1106 TGAGCTCAA-AAAGAGAAGGTTAGTAAACACCAAGAAGTCTCACTT 1150 | ||||||| ||||| ||||| || ||||||||||||||||||||| Sbjct 1076 TCAGCTCAAGAAAGAAAAGGT-AGCAAACACCAAGAAGTCTCACTT 1120 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48454227507 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5