BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17400.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488605 jgi|Araly1|488605|fgenesh2_kg.6__1739__AT5G17400.1 1694 0.0
> Ahg488605 jgi|Araly1|488605|fgenesh2_kg.6__1739__AT5G17400.1
Length=1120
Score = 1694 bits (917), Expect = 0.0
Identities = 1058/1126 (94%), Gaps = 10/1126 (1%)
Strand=Plus/Plus
Query 29 AACGAAATCGCCTCCTCTTCTTCTCCTCCTCGACCTGGAAATCAATCTTTCGCCGCCGAG 88
||||||||||| |||||||||||||||| | |||||||||||||||||| |||||||||
Sbjct 1 AACGAAATCGCTTCCTCTTCTTCTCCTCGACCACCTGGAAATCAATCTTTTGCCGCCGAG 60
Query 89 TTCTTCTCTCTGCGGCGGAGAATCAATTAGCAATCTCCAGAATTAGGTGAGGG-AAAAGA 147
|||||||||||||||| | |||||| ||||||||||||||||||||||| ||| ||||||
Sbjct 61 TTCTTCTCTCTGCGGC-G-GAATCATTTAGCAATCTCCAGAATTAGGTG-GGGAAAAAGA 117
Query 148 GGATGGCTTTGATCGGAAAATCCGAGAGATTCTCTGCTGATTTTGTGATGGGTGGTGCTG 207
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GGATGGCTTTGGTCGGAAAATCCGAGAGATTCTCTGCTGATTTTGTGATGGGTGGTGCTG 177
Query 208 CAGCCATTGTTGCCAAATCTGCAGCTGCTCCAATCGAAAGGGTGAAGCTTTTACTGCAGA 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CAGCCATTGTTGCCAAATCTGCAGCTGCTCCAATCGAAAGGGTGAAGCTTTTACTGCAGA 237
Query 268 ATCAAGGGGAGATGATAAAGACTGGACATCTCATAAGACCTTACACTGGTTTGGGTAATT 327
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 238 ATCAAGGAGAGATGATAAAGACAGGACATCTAATAAGACCTTACACTGGTTTGGGTAATT 297
Query 328 GCTTTACCAGAATCTATAGAGAAGAAGGTGTTTTGTCCTTTTGGAGAGGAAACCAAGCCA 387
||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 298 GCTTTGCCAGAATCTTTAGAGAAGAAGGTGTTTTGTCCTTTTGGAGAGGAAATCAAGCCA 357
Query 388 ATGTCATACGATATTTCCCTACACAGGCTTCCAACTTTGCATTTAAAGGTTACTTCAAGA 447
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGTCATTCGATATTTCCCTACACAGGCTTCCAACTTTGCATTTAAAGGTTACTTCAAGA 417
Query 448 ACCTTCTTGGATGTTCGAAAGAGAAAGATGGTTACTTGAAGTGGTTTGCTGGAAATGTAG 507
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 ACCTTCTCGGATGTTCGAAAGAGAAAGATGGTTACTTGAAGTGGTTTGCTGGAAACGTAG 477
Query 508 CTTCGGGAAGTGCTGCTGGAGCAACAACTTCCTTGTTTCTGTACCATTTGGATTATGCGC 567
|||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 CTTCAGGAAGCGCTGCTGGAGCAACAACTTCCTTGTTTCTGTACCATCTGGATTATGCGC 537
Query 568 GGACCCGTTTAGGCACTGATGCAAAGGAATGTTCTGTTAATGGCAAGAGACAGTTTAAAG 627
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 538 GGACCCGTTTAGGCACTGATGCAAAGGAGTGTTCTGTTAATGGCAAGAGACAGTTTAAAG 597
Query 628 GGATGATCGATGTGTATCGTAAAACTTTGTCAAGTGACGGTATTAAAGGTCTTTACCGTG 687
||||||| |||| |||||||||||| ||||| || || ||||||||||| ||||||||||
Sbjct 598 GGATGATTGATGAGTATCGTAAAACATTGTCGAGCGATGGTATTAAAGGCCTTTACCGTG 657
Query 688 GATTTGGTGTGTCAATAGTGGGAATCACTCTTTACCGAGGAATGTATTTTGGGATGTACG 747
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 658 GATTTGGCGTGTCAATAGTGGGAATCACTCTGTACCGAGGAATGTATTTTGGGATGTACG 717
Query 748 ACACCATCAAACCCATTGTGT-TAGTCGGTTCCTTAGAGGGAAACTTCTTGGCTAGTTTT 806
| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 718 ATACCATCAAACCCATTGT-TCTAGTCGGTTCCTTAGAGGGAAACTTCTTGGCTAGCTTT 776
Query 807 CTATTGGGTTGGAGTATTACTACCTCTGCAGGCGTCATTGCTTACCCTTTTGACACACTT 866
|||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 777 CTATTGGGTTGGAGCATTACTACCTCTGCAGGAGTCATTGCTTATCCTTTTGACACGCTT 836
Query 867 AGGAGGAGAATGATGCTTACATCAGGACAACCTGTTAAATACCGGAACACCATTCATGCC 926
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||
Sbjct 837 AGGAGGAGAATGATGCTTACATCAGGACAACCTGTAAAATACCGGAATGCTATTCACGCC 896
Query 927 TTAAGAGAGATATTGAAGTCGGAAGGGTTCTATGCGCTATATAGAGGAGTTACTGCGAAC 986
|||| ||||||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTAACAGAGATAATGAAATCAGAAGGGTTCTATGCGCTATATAGAGGAGTTACTGCGAAC 956
Query 987 ATGCTTCTTGGAGTAGCAGGAGCAGGAGTGCTTGC-GGGATATGATCAGCTTCACCAGAT 1045
||||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||| |||
Sbjct 957 ATGCTTCTTGGAGTAGCAGGAGCGGGAGTTCTTGCAGGG-TATGATCAGCTTCACTTGAT 1015
Query 1046 TGCTTATAAGCATTGGGTTCAGTAGTTTTGGACCAAACCCGAAACGATGACAATGAAAGC 1105
|||||||||||||||||||||||||||||| | |||| | ||||| || ||||||||| |
Sbjct 1016 TGCTTATAAGCATTGGGTTCAGTAGTTTTGAATCAAATCAGAAACTATTACAATGAAAAC 1075
Query 1106 TGAGCTCAA-AAAGAGAAGGTTAGTAAACACCAAGAAGTCTCACTT 1150
| ||||||| ||||| ||||| || |||||||||||||||||||||
Sbjct 1076 TCAGCTCAAGAAAGAAAAGGT-AGCAAACACCAAGAAGTCTCACTT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5