BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17430.1 Length=1755 Score E Sequences producing significant alignments: (Bits) Value Ahg893654 jgi|Araly1|893654|Al_scaffold_0006_1650 2617 0.0 Ahg944068 jgi|Araly1|944068|scaffold_700297.1 318 7e-86 > Ahg893654 jgi|Araly1|893654|Al_scaffold_0006_1650 Length=1764 Score = 2617 bits (1417), Expect = 0.0 Identities = 1653/1767 (94%), Gaps = 15/1767 (1%) Strand=Plus/Plus Query 1 ATGAACTCGATGAATAACTGGTTAGGCTtctctctctctcCTCATGATCAAAATCATCAC 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1 ATGAACTCGATGAATAACTGGTTAGGTTTCTCTCTCTCTCCTCATGATCAAAATCACCAC 60 Query 61 CGTACGGATGTTGACTCCTCCACCACCAGAACCGCCGTAGATGTTGCCGGAGGGTACTGT 120 ||||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 61 CGTACCGATGTTGAGTCCTCCACCACCACAACCGCCGTAGATGTTGCCGGAGAGTACTGT 120 Query 121 TTTGATCTGGCCGCTCCCTCCGATGAATCTTCTGCCGTTCAAACATCTTTT-CTTTCTCC 179 ||||||||||||||| |||||||||| |||||||||||||||||||||||| | |||||| Sbjct 121 TTTGATCTGGCCGCTGCCTCCGATGAGTCTTCTGCCGTTCAAACATCTTTTGC-TTCTCC 179 Query 180 TTTCGGTGTCACCCTCGAAGCTTTCACCAGAGACAATAATAGTCACTCCCGAGATTGGGA 239 ||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 180 TTTTGGTGTCGTCCTCGAAGCTTTCACCAGAGACAACAATAGTCACTCCCGAGATTGGGA 239 Query 240 CATCAATGGTGGTGCATGCAATAACATTAACAATAACGAACAAAATGGACCAAAGCTTGA 299 ||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||| || Sbjct 240 CATCAATAGTGGTGCATGCAGTAACATCCACAATAATGAACAAAATGGACCAAAGCTGGA 299 Query 300 GAATTTCCTCGGCCGCACCACCACGATTTACAATACCAACGAGACCGTTGTAGATGGAAA 359 |||||| |||||||||| |||||||| |||||||||||| ||| ||||| |||||||| Sbjct 300 GAATTTTCTCGGCCGCAATACCACGATCTACAATACCAACAAGAACGTTGGAGATGGAAG 359 Query 360 TGGC-GAT-TG-TGGA---GGAGG-AGACGGTGGTGGTGGCGGCTCACTAGGCCTTTCGA 412 |||| | | || ||| ||||| ||| | |||||||| ||||||||||||||||||| Sbjct 360 TGGCAGCTGTGAAGGACCTGGAGGTAGA-GACGGTGGTGGTGGCTCACTAGGCCTTTCGA 418 Query 413 TGATAAAAACATGGCTGAGTAATCATTCGGTTGCTAATGCTAATCATCAAGACAATGGTA 472 |||||||||||||||||||||| ||| |||| ||||||| |||| ||||||||||||||| Sbjct 419 TGATAAAAACATGGCTGAGTAACCATCCGGTGGCTAATGTTAATTATCAAGACAATGGTA 478 Query 473 ACGGTGCACGAGGCTTGTCCCTCTCTATGAATTCATCTACTA---GTGATAGCAACAACT 529 ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 479 ACGGTGCACGAGGCTTGTCACTCTCTATGAATTCATCTACTACCTGTGATAGCAACAACT 538 Query 530 ACAACAACAATGATGATGTCGTCCAAGAGAAGACTATTGTTGATGTCGTAGAAACTACAC 589 ||||||||||| ||||||| | ||||||||| ||||||||||||||||||||| | |||| Sbjct 539 ACAACAACAATAATGATGTTGCCCAAGAGAATACTATTGTTGATGTCGTAGAAGCGACAC 598 Query 590 CGAAGAAAACTATTGAGAGTTTTGGACAAAGGACGTCTATATACCGCGGTGTTACAAGGC 649 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 599 CAAAGAAAACTATTGAGAGTTTTGGACAAAGAACGTCTATATACCGCGGTGTTACAAGGC 658 Query 650 ATCGGTGGACAGGTAGATACGAGGCACATTTATGGGACAATAGTTGCAAAAGAGAAGGCC 709 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 659 ATCGGTGGACAGGAAGATACGAGGCACATTTATGGGATAATAGTTGCAAAAGAGAAGGCC 718 Query 710 AGACTCGCAAAGGAAGACAAGTTTATCTGGGAGGTTATGACAAAGAAGAAAAAGCAGCTA 769 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 719 AGACTCGCAAAGGAAGACAAGTTTATTTGGGAGGTTATGATAAAGAAGAAAAAGCAGCTA 778 Query 770 GGGCTTACGATTTAGCCGCACTAAAGTATTGGGGAACCACCACTACTACTAACTTCCCCT 829 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 779 GGGCTTACGATTTAGCCGCACTAAAGTATTGGGGAACCACTACTACTACTAACTTCCCCA 838 Query 830 TGAGTGAATATGAGAAAGAGGTAGAAGAGATGAAGCACATGACGAGGCAAGAGTATGTTG 889 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TGAGTGAATATGAGAAAGAGGTAGAAGAGATGAAGCACATGACGAGGCAAGAGTATGTTG 898 Query 890 CCTCTCTGCGCAGGAAAAGTAGTGGTTTCTCTCGTGGTGCATCGATTTATCGAGGAGTAA 949 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 CCTCTCTCCGCAGGAAAAGTAGTGGTTTCTCTCGTGGTGCATCGATTTATCGAGGAGTAA 958 Query 950 CAAGGCATCACCAACATGGAAGGTGGCAAGCTAGGATCGGAAGAGTCGCCGGTAACAAAG 1009 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 CAAGGCATCACCAACATGGAAGGTGGCAAGCTAGGATCGGAAGAGTCGCCGGTAACAAAG 1018 Query 1010 ACCTCTACTTGGGAACTTTCGGCACACAGGAAGAGGCTGCTGAGGCTTATGACATTGCAG 1069 |||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||| Sbjct 1019 ACCTCTACTTGGGAACTTTCGGTACACAAGAAGAGGCTGCAGAAGCTTATGACATTGCAG 1078 Query 1070 CCATTAAATTCAGAGGATTAAGCGCAGTGACTAACTTCGACATGAACAGATACAATGTTA 1129 |||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||| Sbjct 1079 CCATTAAATTCAGAGGATTAAGTGCAGTGACTAACTTTGATATGAGCAGATACAATGTTA 1138 Query 1130 AAGCAATCCTCGAGAGCCCGAGTCTACCTATTGGTAGTTCTGCGAAACGTCTCAAGGACG 1189 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1139 AAGCAATCCTCGAGAGCCCGAGTCTACCTATTGGTAGTTCTGCAAAACGTCTCAAGGACG 1198 Query 1190 TTAATAATCCGGTTCCA-GCTATGATGATTAGTAATAACGTTTCAGAGAGTGCAAATAAT 1248 |||| |||||||||||| | |||||||||||||||||||||||||||||||| ||||||| Sbjct 1199 TTAACAATCCGGTTCCAAG-TATGATGATTAGTAATAACGTTTCAGAGAGTGGAAATAAT 1257 Query 1249 GTTAGCGGTTGGCAAAACACTGCGTTTCAGCATCATCAGGGAATGGATTTGAGCTTATTG 1308 | ||| |||||||||||| |||||||||||||| | |||||| ||||||||| ||||||| Sbjct 1258 GCTAGTGGTTGGCAAAACGCTGCGTTTCAGCATAACCAGGGAGTGGATTTGAACTTATTG 1317 Query 1309 CAGCAACAGCAGGAGAGGTACGTTGGTTATTACAATGGAGGAAACTTGTCTACCGAGAGT 1368 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1318 CAGCAACAGCAGGAGAGGTACGTTGGTTATTACAATGGAAGAAACTTGTCTACCGAGAGT 1377 Query 1369 ACTAGGGTTTGTTTCAAACAAGAGGAGGAACAACAACACTTCTTGAGAAACTCGCCGAGT 1428 | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1378 AGTAGGGTTTGTTTCAAACAAGAGGAGGAACAACAACACTTCTTGAGCAACTCGCCGAGC 1437 Query 1429 CACATGACTAATGTTGATCATCATAGCTCGACCTCTGATGATTCTGTTACCGTTTGTGGA 1488 | |||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 1438 CTCATGACTAATGTCGATCATCATATCTCGACTTCTGATGATTCGGTTACCGTTTGTGGA 1497 Query 1489 AATGTTGTTAGTTATGGTGGTTATCAAGGATTCGCAATCCCTGTTGGAACATCGGTTAAT 1548 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1498 AATGTCGTTAGTTATGGTGGTTATCAAGGATTTGCAATCCCTGTTGGAACATCGGTTAAT 1557 Query 1549 TACGATCCCTTTACTGCTGCTGAGATTGCTTACAACGCAAGAAATCATTATTACTATGCT 1608 | ||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 1558 TGTGATGTCTTCACTGCTGCTGAGATTGCTTACAACGCAAGAAATCGTTATTATTATGCT 1617 Query 1609 CAGCATCAGCAACAACAGCAGATTCAGCAGTCGCCGGGAGGAGATTTTCCGGTGGCGATT 1668 ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1618 CAGCAGCAGCAACAACAGCAGATTCAGCATTCTCCGGGAGGAGATTTTCCGGTGGCGATT 1677 Query 1669 TCGAATAACCATAGCTCTAACATGTACTTTCACGGGGAAGGTGGTGGAGAAGGGGCTCCA 1728 ||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||| || Sbjct 1678 TCGAATAACGTTAGCTCTAACATGTACTTTCATGGTGAAGGCGGTGGAGAAGGGGCTTCA 1737 Query 1729 ACGTTTTCAGTTTGGAACGACACTTAG 1755 |||||| |||||||||||||| ||||| Sbjct 1738 ACGTTTACAGTTTGGAACGACGCTTAG 1764 > Ahg944068 jgi|Araly1|944068|scaffold_700297.1 Length=1696 Score = 318 bits (172), Expect = 7e-86 Identities = 412/526 (78%), Gaps = 23/526 (4%) Strand=Plus/Plus Query 593 AGAAAA-CTATTGAGAGTTTTGGACAAAGGACGTCT-ATATACCGCGGTGTTACAAGGCA 650 |||||| |||| || | |||||| ||| | || ||| | |||||| || |||||||| || Sbjct 819 AGAAAATCTATCGATACTTTTGGGCAACGAACTTCTCA-ATACCGAGGCGTTACAAGACA 877 Query 651 TCGGTGGACAGGTAGATACGAGGCACATTTATGGGACAATAGTTGCAA-AAGAGAAGG-C 708 | | ||||| |||||||| || || ||| ||||||||||||||| ||| ||| ||||| | Sbjct 878 TAGATGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGTTTCAAGAAG-GAAGGTC 936 Query 709 -CAGACTCGCAAAGGAAGACAAGTTTATCTGGGAGGTTATGACAAAGAAGAAAAAGCAGC 767 ||| | | |||||||||||||||||||||||||||||||| | || || ||||| || Sbjct 937 ACAG-C-AGAAAAGGAAGACAAGTTTATCTGGGAGGTTATGATATGGAGGAGAAAGCTGC 994 Query 768 TAGGGCTTACGAT-TTAGCCGCACTAAAGTATTGGGGAACCACCACT-ACTACTAACTTC 825 | | || || ||| || || ||||| ||||| ||||| || | ||| || || || ||| Sbjct 995 TCGAGCATATGATCTT-GCTGCACTCAAGTACTGGGGTCCCTCTACTCAC-ACCAATTTC 1052 Query 826 CCCTTG-AGTGAAT-ATGAGAAAGAGGTAGAAGAGATGAAGCACATGACGAGGCAAGAGT 883 | | | || |||| || |||||||| | ||||| |||||| | ||||| || ||||| | Sbjct 1053 TC-T-GCAGAGAATTATCAGAAAGAGATTGAAGACATGAAGAATATGACTAGACAAGAAT 1110 Query 884 ATGTTGCCTC-TCTGCGCAGGAAAAGTAGTGGTTTCTCTCGTGGTGCATCGATTTATCGA 942 ||||||| || | || | ||||| || |||||||||||| | ||||| || || ||| || Sbjct 1111 ATGTTGC-TCATTTGAGAAGGAAGAGCAGTGGTTTCTCTAGGGGTGCTTCCATCTATAGA 1169 Query 943 GGAGTAACAAGGCATCACCAACATGGAAGGTGGCAAGCTA-GGATCGGAAGAGTCGCCGG 1001 ||||| ||||| |||||||| ||||||||||||||||| | |||| || ||||| ||||| Sbjct 1170 GGAGTCACAAGACATCACCAGCATGGAAGGTGGCAAGC-ACGGATTGGTAGAGTTGCCGG 1228 Query 1002 TAACAAAGACCTCTACTTGGGAACTTTCGGCACACAGGAAGAGGCTGCTGAGGCTTATGA 1061 |||||||| |||||| | |||||||| || || || ||||| ||||| || || || || Sbjct 1229 AAACAAAGATCTCTACCTCGGAACTTTTGGAACTCAAGAAGAAGCTGCAGAAGCCTACGA 1288 Query 1062 CATTGCAGCCATTAAATTCAGAGG-ATTAAGCGCAGTGACTAACTT 1106 | ||||| || || ||| | || | || ||| ||||||||||| Sbjct 1289 TGTAGCAGCAATCAAGTTCCGTGGCACAAA-CGCTGTGACTAACTT 1333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65858033605 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5