BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17430.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893654 jgi|Araly1|893654|Al_scaffold_0006_1650 2617 0.0
Ahg944068 jgi|Araly1|944068|scaffold_700297.1 318 7e-86
> Ahg893654 jgi|Araly1|893654|Al_scaffold_0006_1650
Length=1764
Score = 2617 bits (1417), Expect = 0.0
Identities = 1653/1767 (94%), Gaps = 15/1767 (1%)
Strand=Plus/Plus
Query 1 ATGAACTCGATGAATAACTGGTTAGGCTtctctctctctcCTCATGATCAAAATCATCAC 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAACTCGATGAATAACTGGTTAGGTTTCTCTCTCTCTCCTCATGATCAAAATCACCAC 60
Query 61 CGTACGGATGTTGACTCCTCCACCACCAGAACCGCCGTAGATGTTGCCGGAGGGTACTGT 120
||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 61 CGTACCGATGTTGAGTCCTCCACCACCACAACCGCCGTAGATGTTGCCGGAGAGTACTGT 120
Query 121 TTTGATCTGGCCGCTCCCTCCGATGAATCTTCTGCCGTTCAAACATCTTTT-CTTTCTCC 179
||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 121 TTTGATCTGGCCGCTGCCTCCGATGAGTCTTCTGCCGTTCAAACATCTTTTGC-TTCTCC 179
Query 180 TTTCGGTGTCACCCTCGAAGCTTTCACCAGAGACAATAATAGTCACTCCCGAGATTGGGA 239
||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 TTTTGGTGTCGTCCTCGAAGCTTTCACCAGAGACAACAATAGTCACTCCCGAGATTGGGA 239
Query 240 CATCAATGGTGGTGCATGCAATAACATTAACAATAACGAACAAAATGGACCAAAGCTTGA 299
||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||| ||
Sbjct 240 CATCAATAGTGGTGCATGCAGTAACATCCACAATAATGAACAAAATGGACCAAAGCTGGA 299
Query 300 GAATTTCCTCGGCCGCACCACCACGATTTACAATACCAACGAGACCGTTGTAGATGGAAA 359
|||||| |||||||||| |||||||| |||||||||||| ||| ||||| ||||||||
Sbjct 300 GAATTTTCTCGGCCGCAATACCACGATCTACAATACCAACAAGAACGTTGGAGATGGAAG 359
Query 360 TGGC-GAT-TG-TGGA---GGAGG-AGACGGTGGTGGTGGCGGCTCACTAGGCCTTTCGA 412
|||| | | || ||| ||||| ||| | |||||||| |||||||||||||||||||
Sbjct 360 TGGCAGCTGTGAAGGACCTGGAGGTAGA-GACGGTGGTGGTGGCTCACTAGGCCTTTCGA 418
Query 413 TGATAAAAACATGGCTGAGTAATCATTCGGTTGCTAATGCTAATCATCAAGACAATGGTA 472
|||||||||||||||||||||| ||| |||| ||||||| |||| |||||||||||||||
Sbjct 419 TGATAAAAACATGGCTGAGTAACCATCCGGTGGCTAATGTTAATTATCAAGACAATGGTA 478
Query 473 ACGGTGCACGAGGCTTGTCCCTCTCTATGAATTCATCTACTA---GTGATAGCAACAACT 529
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 479 ACGGTGCACGAGGCTTGTCACTCTCTATGAATTCATCTACTACCTGTGATAGCAACAACT 538
Query 530 ACAACAACAATGATGATGTCGTCCAAGAGAAGACTATTGTTGATGTCGTAGAAACTACAC 589
||||||||||| ||||||| | ||||||||| ||||||||||||||||||||| | ||||
Sbjct 539 ACAACAACAATAATGATGTTGCCCAAGAGAATACTATTGTTGATGTCGTAGAAGCGACAC 598
Query 590 CGAAGAAAACTATTGAGAGTTTTGGACAAAGGACGTCTATATACCGCGGTGTTACAAGGC 649
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 CAAAGAAAACTATTGAGAGTTTTGGACAAAGAACGTCTATATACCGCGGTGTTACAAGGC 658
Query 650 ATCGGTGGACAGGTAGATACGAGGCACATTTATGGGACAATAGTTGCAAAAGAGAAGGCC 709
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 ATCGGTGGACAGGAAGATACGAGGCACATTTATGGGATAATAGTTGCAAAAGAGAAGGCC 718
Query 710 AGACTCGCAAAGGAAGACAAGTTTATCTGGGAGGTTATGACAAAGAAGAAAAAGCAGCTA 769
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 719 AGACTCGCAAAGGAAGACAAGTTTATTTGGGAGGTTATGATAAAGAAGAAAAAGCAGCTA 778
Query 770 GGGCTTACGATTTAGCCGCACTAAAGTATTGGGGAACCACCACTACTACTAACTTCCCCT 829
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 779 GGGCTTACGATTTAGCCGCACTAAAGTATTGGGGAACCACTACTACTACTAACTTCCCCA 838
Query 830 TGAGTGAATATGAGAAAGAGGTAGAAGAGATGAAGCACATGACGAGGCAAGAGTATGTTG 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGAGTGAATATGAGAAAGAGGTAGAAGAGATGAAGCACATGACGAGGCAAGAGTATGTTG 898
Query 890 CCTCTCTGCGCAGGAAAAGTAGTGGTTTCTCTCGTGGTGCATCGATTTATCGAGGAGTAA 949
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CCTCTCTCCGCAGGAAAAGTAGTGGTTTCTCTCGTGGTGCATCGATTTATCGAGGAGTAA 958
Query 950 CAAGGCATCACCAACATGGAAGGTGGCAAGCTAGGATCGGAAGAGTCGCCGGTAACAAAG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CAAGGCATCACCAACATGGAAGGTGGCAAGCTAGGATCGGAAGAGTCGCCGGTAACAAAG 1018
Query 1010 ACCTCTACTTGGGAACTTTCGGCACACAGGAAGAGGCTGCTGAGGCTTATGACATTGCAG 1069
|||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 1019 ACCTCTACTTGGGAACTTTCGGTACACAAGAAGAGGCTGCAGAAGCTTATGACATTGCAG 1078
Query 1070 CCATTAAATTCAGAGGATTAAGCGCAGTGACTAACTTCGACATGAACAGATACAATGTTA 1129
|||||||||||||||||||||| |||||||||||||| || |||| ||||||||||||||
Sbjct 1079 CCATTAAATTCAGAGGATTAAGTGCAGTGACTAACTTTGATATGAGCAGATACAATGTTA 1138
Query 1130 AAGCAATCCTCGAGAGCCCGAGTCTACCTATTGGTAGTTCTGCGAAACGTCTCAAGGACG 1189
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1139 AAGCAATCCTCGAGAGCCCGAGTCTACCTATTGGTAGTTCTGCAAAACGTCTCAAGGACG 1198
Query 1190 TTAATAATCCGGTTCCA-GCTATGATGATTAGTAATAACGTTTCAGAGAGTGCAAATAAT 1248
|||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1199 TTAACAATCCGGTTCCAAG-TATGATGATTAGTAATAACGTTTCAGAGAGTGGAAATAAT 1257
Query 1249 GTTAGCGGTTGGCAAAACACTGCGTTTCAGCATCATCAGGGAATGGATTTGAGCTTATTG 1308
| ||| |||||||||||| |||||||||||||| | |||||| ||||||||| |||||||
Sbjct 1258 GCTAGTGGTTGGCAAAACGCTGCGTTTCAGCATAACCAGGGAGTGGATTTGAACTTATTG 1317
Query 1309 CAGCAACAGCAGGAGAGGTACGTTGGTTATTACAATGGAGGAAACTTGTCTACCGAGAGT 1368
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1318 CAGCAACAGCAGGAGAGGTACGTTGGTTATTACAATGGAAGAAACTTGTCTACCGAGAGT 1377
Query 1369 ACTAGGGTTTGTTTCAAACAAGAGGAGGAACAACAACACTTCTTGAGAAACTCGCCGAGT 1428
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1378 AGTAGGGTTTGTTTCAAACAAGAGGAGGAACAACAACACTTCTTGAGCAACTCGCCGAGC 1437
Query 1429 CACATGACTAATGTTGATCATCATAGCTCGACCTCTGATGATTCTGTTACCGTTTGTGGA 1488
| |||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 1438 CTCATGACTAATGTCGATCATCATATCTCGACTTCTGATGATTCGGTTACCGTTTGTGGA 1497
Query 1489 AATGTTGTTAGTTATGGTGGTTATCAAGGATTCGCAATCCCTGTTGGAACATCGGTTAAT 1548
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1498 AATGTCGTTAGTTATGGTGGTTATCAAGGATTTGCAATCCCTGTTGGAACATCGGTTAAT 1557
Query 1549 TACGATCCCTTTACTGCTGCTGAGATTGCTTACAACGCAAGAAATCATTATTACTATGCT 1608
| ||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1558 TGTGATGTCTTCACTGCTGCTGAGATTGCTTACAACGCAAGAAATCGTTATTATTATGCT 1617
Query 1609 CAGCATCAGCAACAACAGCAGATTCAGCAGTCGCCGGGAGGAGATTTTCCGGTGGCGATT 1668
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1618 CAGCAGCAGCAACAACAGCAGATTCAGCATTCTCCGGGAGGAGATTTTCCGGTGGCGATT 1677
Query 1669 TCGAATAACCATAGCTCTAACATGTACTTTCACGGGGAAGGTGGTGGAGAAGGGGCTCCA 1728
||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||| ||
Sbjct 1678 TCGAATAACGTTAGCTCTAACATGTACTTTCATGGTGAAGGCGGTGGAGAAGGGGCTTCA 1737
Query 1729 ACGTTTTCAGTTTGGAACGACACTTAG 1755
|||||| |||||||||||||| |||||
Sbjct 1738 ACGTTTACAGTTTGGAACGACGCTTAG 1764
> Ahg944068 jgi|Araly1|944068|scaffold_700297.1
Length=1696
Score = 318 bits (172), Expect = 7e-86
Identities = 412/526 (78%), Gaps = 23/526 (4%)
Strand=Plus/Plus
Query 593 AGAAAA-CTATTGAGAGTTTTGGACAAAGGACGTCT-ATATACCGCGGTGTTACAAGGCA 650
|||||| |||| || | |||||| ||| | || ||| | |||||| || |||||||| ||
Sbjct 819 AGAAAATCTATCGATACTTTTGGGCAACGAACTTCTCA-ATACCGAGGCGTTACAAGACA 877
Query 651 TCGGTGGACAGGTAGATACGAGGCACATTTATGGGACAATAGTTGCAA-AAGAGAAGG-C 708
| | ||||| |||||||| || || ||| ||||||||||||||| ||| ||| ||||| |
Sbjct 878 TAGATGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGTTTCAAGAAG-GAAGGTC 936
Query 709 -CAGACTCGCAAAGGAAGACAAGTTTATCTGGGAGGTTATGACAAAGAAGAAAAAGCAGC 767
||| | | |||||||||||||||||||||||||||||||| | || || ||||| ||
Sbjct 937 ACAG-C-AGAAAAGGAAGACAAGTTTATCTGGGAGGTTATGATATGGAGGAGAAAGCTGC 994
Query 768 TAGGGCTTACGAT-TTAGCCGCACTAAAGTATTGGGGAACCACCACT-ACTACTAACTTC 825
| | || || ||| || || ||||| ||||| ||||| || | ||| || || || |||
Sbjct 995 TCGAGCATATGATCTT-GCTGCACTCAAGTACTGGGGTCCCTCTACTCAC-ACCAATTTC 1052
Query 826 CCCTTG-AGTGAAT-ATGAGAAAGAGGTAGAAGAGATGAAGCACATGACGAGGCAAGAGT 883
| | | || |||| || |||||||| | ||||| |||||| | ||||| || ||||| |
Sbjct 1053 TC-T-GCAGAGAATTATCAGAAAGAGATTGAAGACATGAAGAATATGACTAGACAAGAAT 1110
Query 884 ATGTTGCCTC-TCTGCGCAGGAAAAGTAGTGGTTTCTCTCGTGGTGCATCGATTTATCGA 942
||||||| || | || | ||||| || |||||||||||| | ||||| || || ||| ||
Sbjct 1111 ATGTTGC-TCATTTGAGAAGGAAGAGCAGTGGTTTCTCTAGGGGTGCTTCCATCTATAGA 1169
Query 943 GGAGTAACAAGGCATCACCAACATGGAAGGTGGCAAGCTA-GGATCGGAAGAGTCGCCGG 1001
||||| ||||| |||||||| ||||||||||||||||| | |||| || ||||| |||||
Sbjct 1170 GGAGTCACAAGACATCACCAGCATGGAAGGTGGCAAGC-ACGGATTGGTAGAGTTGCCGG 1228
Query 1002 TAACAAAGACCTCTACTTGGGAACTTTCGGCACACAGGAAGAGGCTGCTGAGGCTTATGA 1061
|||||||| |||||| | |||||||| || || || ||||| ||||| || || || ||
Sbjct 1229 AAACAAAGATCTCTACCTCGGAACTTTTGGAACTCAAGAAGAAGCTGCAGAAGCCTACGA 1288
Query 1062 CATTGCAGCCATTAAATTCAGAGG-ATTAAGCGCAGTGACTAACTT 1106
| ||||| || || ||| | || | || ||| |||||||||||
Sbjct 1289 TGTAGCAGCAATCAAGTTCCGTGGCACAAA-CGCTGTGACTAACTT 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5