BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17440.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488610 jgi|Araly1|488610|fgenesh2_kg.6__1744__AT5G17440.1 2425 0.0
Ahg477583 jgi|Araly1|477583|fgenesh2_kg.3__284__AT3G03340.1 1173 0.0
> Ahg488610 jgi|Araly1|488610|fgenesh2_kg.6__1744__AT5G17440.1
Length=1486
Score = 2425 bits (1313), Expect = 0.0
Identities = 1437/1496 (96%), Gaps = 12/1496 (1%)
Strand=Plus/Plus
Query 4 CAAAAACCCAAATCTCTCTGTTCGCAGAGAGGATCAATTCGTGATTCAGAGAATCAAACT 63
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAAAACCC-AATCTCTCTGTTCGCAGAGAGGATCAATTCGTGATTCAGAGAATCAAACT 59
Query 64 TACTGTGAGAGAGAGATAACGAAGATGGACGCTATGAGGAAGCAACTCGATGTGCTCATG 123
| ||| | | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 T--GGTGTGTGTGAGATAACGAAGATGGACGCTATGAGGAAACAACTCGATGTGCTCATG 117
Query 124 GGAGCTAACAGAAACGGCGATGTCACTGAGGTCAATCGCAAATACTACGACCGCGATGTT 183
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 118 GGAGCTAACAGAAACGGCGATGTCACGGAGGTCAATCGCAAATACTACGACCGTGATGTT 177
Query 184 TGCCGTCTTTACCTCTCTGGTCTCTGCCCTCACGAGCTTTTCCAATTGACGAAAATGGAT 243
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 178 TGCCGTCTTTACCTATCTGGTCTCTGTCCTCACGAGCTCTTCCAATTGACGAAAATGGAT 237
Query 244 ATGGGTCCTTGCCCAAAGGTGCACTCTTTGCAGCTGAGGAAAGAATATAAAGATGCAAAG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 ATGGGTCCTTGCCCAAAGGTGCACTCTTTGCAGCTGAGGAAAGAATATAAAGAAGCAAAG 297
Query 304 GCAAAAGGTGTTGACAACTATGATAGGGAATTGGAAGATGCGATAGATAGGCTTATTGTT 363
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCAAAAGGTGTTGACAACTACGATAGGGAATTGGAAGATGCGATAGATAGGCTTATTGTT 357
Query 364 GAGTGTGATAGGAAGATTGGTAGGGCTCTTAATCGTCTTCAAGAAGAGGATGCCAAAGCT 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 GAGTGTGATAGGAAGATTGGTAGGGCTCTTAATCGTCTTCAGGAAGAGGATGCCAAAGCT 417
Query 424 GCCATTGCAATTTCTGTCACAGAATTTACTCAGTCACCTGAAATTCTTGAATTATCGAAG 483
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 418 GCCATTGCAATTTCTGTCACAGAATTTACTCAGTCGCCTGAAATTCTTGAATTATCGAAG 477
Query 484 CAAATCAAAGAAAAGATGAAGGAAGCAGACCTGCACGATCTTGAAGGCAAAACAGATCTG 543
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CAAATCAAAGAGAAGATGAAGGAAGCAGACCTGCACGATCTTGAAGGCAAAACAGATCTG 537
Query 544 AAGATTAGAGCTCTTGAGTTAGTTGAAGAGATGAGGACGAAGAGAGCTGACCTACAGGCT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGATTAGAGCTCTTGAGTTAGTTGAAGAGATGAGGACGAAGAGAGCTGACCTACAGGCT 597
Query 604 GTGCTACTGTTGGATGCCTTTAACAAAGATAGGACATCCTTGCAACAGGC-AGTTCCAGC 662
|||||||||||||||||||| |||||||||||| |||||||||||||| | | |||||||
Sbjct 598 GTGCTACTGTTGGATGCCTTCAACAAAGATAGGGCATCCTTGCAACAGCCCA-TTCCAGC 656
Query 663 TCAGCAACCAGCTGCAACTTTACCTCCGCCCGATCCTCGTACTCAAGAAATGATCAATGA 722
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 657 TCAGCAACCAGCTGCAGCGTTACCTCCTCCCGATCCTCGTACTCAAGAAATGATCAATGA 716
Query 723 AAAACTAAAGAAAGCAGAAGAGCTTGGTGAACAAGGGATGGTTGATGAAGCGCAGAAAGC 782
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 717 AAAACTAAAGAAAGCAGAAGAGCTTGGTGAACAAGGAATGGTTGATGAGGCGCAGAAAGC 776
Query 783 ACTAGAAGAGGCGGAAGCTCTTAAGAAGCTTACTGCTAGACAAGAACCTGTAGTGGATTC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACTAGAAGAGGCGGAAGCTCTTAAGAAGCTTACTGCTAGACAAGAACCTGTAGTGGATTC 836
Query 843 AACCAAGTACACTGCTGCTGACGTGCGCATTACAGACCAGAAGCTGCGTCTATGTGACAT 902
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AACCAAGTACACTGCTGTTGACGTGCGCATTACAGACCAGAAGCTGCGTCTATGTGACAT 896
Query 903 ATGCGGAGCATTTTTGAGCGTCTATGACAGTGATCGTCGGTTAGCTGATCATTTTGGAGG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATGCGGAGCATTTTTGAGCGTCTATGACAGTGATCGTCGGTTAGCTGATCATTTTGGAGG 956
Query 963 GAAGCTTCACTTGGGTTACATGCTGATCCGCGACAAATTGGCAGAGCTTCAGGAGGAGAA 1022
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GAAGCTTCATTTGGGTTACATGCTGATCCGCGACAAATTGGCAGAGCTTCAGGAGGAGAA 1016
Query 1023 GAACAAAGTTCACAAGGAACGGGTCGaagaaaggagatcaaaggagaggagtagagagcg 1082
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1017 GAACAAAGTTCACAAGGAACGGGTCGAAGAAAGGAGATCGAAGGAGAGAAGTAGAGAGCG 1076
Query 1083 agaatcaagtaaagacagagacggaggagaTAACCGTGACCGAGGAAGAGATGTTGACCG 1142
|||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1077 AGAACCAAGTAAAGACAGAGACGGAGGAGATAGCCGTGACCGTGGAAGAGATGTTGACCG 1136
Query 1143 CAGGAGTAGAGATCGTGACAGGCACCATGACCACCGAGAACATGACAGAAACTATAATCA 1202
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TAGGAGTAGAGATCGCGACAGGCACCATGACCACCGAGAACATGACAGAAACTATAATCA 1196
Query 1203 GTCACGTGGCTATGACTCAAGAAGCCGGCGCAGTTCACGGTCCCGGTCTAGGGAAAGACC 1262
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1197 GTCACGTGGCTATGAGTCGAGAAGCCGGCGCAGTTCGCGGTCCCGGTCTAGGGAAAGACC 1256
Query 1263 GAGGGATCATGATCGCCGCAGACGCCATGACCGCTACTAAAACCCTGCCAAAGATGGTTG 1322
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1257 GAGGGATTATGATCGCCGCAGACGCCATGACCGCTACTAAGACCCTGCCAAAGATGGTTG 1316
Query 1323 CACCTGGTTTAAGAGGTTCTTACAGATGCGTTTAGGATCTATTTGGAGTTACAAACACTT 1382
|||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1317 CACCGGGTTTAAGGGGTTCTTACAGATGCGTTTAGGATCAATTTGGAGTTGCAAACACTT 1376
Query 1383 TCTTTTTTCTTTGCTCAAGTGTTTTAAGGATTTTT-GAGATTGTAACTTACTTTAAGTTT 1441
|| |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 1377 TCATTTTTCTTTGCTCAAGTGTTTTAAGGATTTTTTGAGATTGTAAGTTACTA-AAGTTT 1435
Query 1442 GTAAGAGGAGCTTCTTCAGATATCTTTAATTTGTTTTTTATGTTGTTGACATCAAA 1497
|||||||||||| || ||||||| ||| | | ||||||||||||||||||||||
Sbjct 1436 GTAAGAGGAGCTCCTCCAGATAT-TTT--T--GATTTTTATGTTGTTGACATCAAA 1486
> Ahg477583 jgi|Araly1|477583|fgenesh2_kg.3__284__AT3G03340.1
Length=1457
Score = 1173 bits (635), Expect = 0.0
Identities = 1053/1251 (84%), Gaps = 44/1251 (4%)
Strand=Plus/Plus
Query 70 GAGAGAGAGATAACGAAGATGGACGCTATGAGGAAGCAACTCGATGTGCTCATGGGAGCT 129
|||||||||| |||||||||||| || || |||||||| |||||||| |||||||||||
Sbjct 25 GAGAGAGAGAGAACGAAGATGGATGCCATAAGGAAGCAGCTCGATGTACTCATGGGAGCG 84
Query 130 AACAGAAACGGCGATG-TCACTGAGGTCAATCGCAAATACTACGACCGCGATGTTTGCCG 188
||| |||||||||| | ||| ||||| |||||||||||||||||||| ||||| || ||
Sbjct 85 AACCGAAACGGCGACGTTCA-GGAGGTGAATCGCAAATACTACGACCGTGATGTCTGTCG 143
Query 189 TCTTTACCTCTCTGGTCTCTGCCCTCACGAGCTTTTCCAATTGACGAAAATGGATATGGG 248
||||||| | || ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 144 TCTTTACTTGTCCGGTCTCTGCCCTCACGATCTCTTCCAATTGACGAAAATGGATATGGG 203
Query 249 TCCTTGCCCAAAGGTGCACTCTTTGCAGCTGAGGAAAGAATATAAAGATGCAAAGGCAAA 308
||||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 204 ACCTTGCCCAAAGGTGCACTCTTTGCAGCTTAGGAAAGAATATCGGGAAGCAAAGGCAAA 263
Query 309 AGGTGTTGACAACTATGATAGGGAATTGGAAGATGCGATAGATAGGCTTATTGTTGAGTG 368
||||||||| ||||| || ||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 264 AGGTGTTGATAACTACGACAGGGAATTGGAAGATGCCATAGACAGACTTATCGTTGAGTG 323
Query 369 TGATAGGAAGATTGGTAGGGCTCTTAATCGTCTTCAAGAAGAGGATGCCAAAGCTGCCAT 428
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 324 TGATAGGAAGATTGGTAGGGCCCTTAAGCGTCTTCAAGAAGAGGACGCCAAAGCTGCCAT 383
Query 429 TGCAATTTCTGTCACAGAATTTACTCAGTCACCTGAAATTCTTGAATTATCGAAGCAAAT 488
||| ||||| ||| | ||| | |||||||| |||||||||||||| |||||| || ||||
Sbjct 384 TGCCATTTCAGTCTCTGAAGTCACTCAGTCTCCTGAAATTCTTGAGTTATCGGAGAAAAT 443
Query 489 CAAAGAAAAGATGAAGGAAGCAGACCTGCACGATCTTGAAGGCAAAACAGATCTGAAGAT 548
|||||| ||||||||||||||||| | ||||||||||||||||||| ||||| |||||
Sbjct 444 CAAAGAGAAGATGAAGGAAGCAGATATCCACGATCTTGAAGGCAAAATGGATCTTAAGAT 503
Query 549 TAGAGCTCTTGAGTTAGTTGAAGAGATGAGGACGAAGAGAGCTGACCTA-CAGGCTGTGC 607
|||||||||||||||||| ||||| |||||||| ||||||||||||| | ||||| ||||
Sbjct 504 TAGAGCTCTTGAGTTAGTCGAAGAAATGAGGACCAAGAGAGCTGACC-AGCAGGCGGTGC 562
Query 608 TACTGTTGGATGCCTTTAACAAAGATAG-GACATCCTTGCAACAGGCAGTTCCAGCTCAG 666
| |||||||| ||||||||||||||||| | ||||||||| |||| | |||||||||||
Sbjct 563 TGCTGTTGGAAGCCTTTAACAAAGATAGAG-CATCCTTGCCACAGCCTGTTCCAGCTCAA 621
Query 667 CAACCAGCTGCAACTTTACCTCCGCCCGATCCTCGTACTCAAGAAATGATCAATGAAAAA 726
| |||| || | | |||||| | || |||||||| |||||||||||||| ||||| |||
Sbjct 622 CCACCATCTTCCGCATTACCTACACCAGATCCTCGCACTCAAGAAATGATAAATGAGAAA 681
Query 727 CTAAAGAAAGCAGAAGAGCTTGGTGAACAAGGGATGGTTGATGAAGCGCAGAAAGCACTA 786
|| ||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 682 CTGAAGAAGGCAGAAGATCTTGGTGAACAAGGAATGGTTGATGAAGCACAGAAAGCACTG 741
Query 787 GAAGAGGCGGAAGCTCTTAAGAAGCTTACTGCTAGACAAGAACCTGTAGTGGATTCAACC 846
|||||||| |||||||||||||||||||| | ||||| |||||||| || ||||||||
Sbjct 742 GAAGAGGCTGAAGCTCTTAAGAAGCTTACAGTTAGACGAGAACCTGCAGCAGATTCAACG 801
Query 847 AAGTACACTGCTGCTGACGTGCGCATTACAGACCAGAAGCTGCGTCTATGTGACATATGC 906
||||||||||||| ||| ||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 802 AAGTACACTGCTGTTGATGTGCGCATTACGGACCAAAAGTTGCGTCTATGTGACATATGT 861
Query 907 GGAGCATTTTTGAGCGTCTATGACAGTGATCGTCGGTTAGCTGATCATTTTGGAGGGAAG 966
|||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 862 GGAGCATTCTTGAGCGTCTATGACAGTGATCGCCGTTTAGCTGATCATTTTGGTGGGAAG 921
Query 967 CTTCACTTGGGTTACATGCT-GATCCGCGACAAATTGGCAGAGCTTCAGGAGGAGAAGAA 1025
||||| || || |||||||| | |||| |||||||| | ||||||| ||| ||||||
Sbjct 922 CTTCATTTAGGATACATGCTAG-TCCGGGACAAATTAACTGAGCTTCTGGATGAGAAGGC 980
Query 1026 CAAAGTT-CACAAGGAACGGGTCGaagaaa-ggagatcaaaggagaggagtagagagcga 1083
||| || | ||| ||| | || ||| || ||| | || | | ||||| || | | |
Sbjct 981 CAAT-TTACGCAATGAAAGA-TCAAAGGAACGGA-A-CA--GTA-AGGAG-AG-G-G--A 1028
Query 1084 gaatcaagtaaagac--agagacggag-gag-aTA-AC-CGTGACCGAGGAAGAGATGT- 1136
| |||||||||||| ||||| ||| ||| || | | ||| || |||||||| |
Sbjct 1029 -A-TCAAGTAAAGACCGAGAGAAAGAGCGAGGATCTAGTCATGAACGTCGAAGAGAT-TA 1085
Query 1137 TGACCGCAGGAGTAGAGATCGTGACAGGCACCATGACC---ACCGAGAACATGACAGAAA 1193
||| ||||||||||||||||| || ||||||||||||| | || ||||| ||||| |
Sbjct 1086 TGATCGCAGGAGTAGAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACAGGGA 1145
Query 1194 CTATAATCAGTCACG-TGGCTATGACTCAAGAAGCCGG-CGCAGTTCACGGTCCCGGTCT 1251
|||| ||| ||||| | | | || || || | || | | | ||||||||| ||||
Sbjct 1146 CTATGATCGGTCACACT--CAA-GAAGCA-GACGTAGGTCAC-GCTCACGGTCCAGGTCC 1200
Query 1252 AGGGAAAGACCGAGGGA-TCATGATCGCCGCAGACGCCATGACCGCTACTA 1301
|| || ||||| ||||| | ||||||||| ||| || || ||||||||||
Sbjct 1201 AGAGACAGACCAAGGGACT-ATGATCGCCACAGGCGTCACAACCGCTACTA 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5