BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17450.1
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488611 jgi|Araly1|488611|fgenesh2_kg.6__1745__AT5G17450.1 948 0.0
> Ahg488611 jgi|Araly1|488611|fgenesh2_kg.6__1745__AT5G17450.1
Length=674
Score = 948 bits (513), Expect = 0.0
Identities = 629/680 (93%), Gaps = 27/680 (4%)
Strand=Plus/Plus
Query 1 ATACATATTAA-TT-TACACACA--TTTGATC--ATATACACATAGtttttttGCTGACG 54
||||||||||| || |||||| | ||||||| ||||| |||||||||||||| | |
Sbjct 1 ATACATATTAATTTATACACATATTTTTGATCATATATATACATAGTTTTTTTG-T--TG 57
Query 55 AAAAAAGAGAATGGGTGCATTTGATTATATCTCTAGCTTTTGTTCATATACATACGCTAA 114
|| | |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 58 -AAGAGGAGAATGGGTGCATTTGATTATATATCTAGCTTTTGTTCATACACATATGCTAA 116
Query 115 TGCCAAAACCAAGCGTAAGCCATTGCAGACAGTGGATATCAAGGTGAAAATGGACTGTGA 174
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 117 TGCCAAAACCAAGCGTAAGCCATTGCAGACTGTGGATATCAAGGTAAAAATGGACTGTGA 176
Query 175 TGGTTGTGAAAGGAGAGTTAGAAACGTGGTTCGTCGCATGAAAGGGGTGAAATCGGTGGA 234
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TGGTTGTGAAAGAAGAGTTAGAAACGTGGTTCGTCGCATGAAAGGGGTGAAATCGGTGGA 236
Query 235 GGTGAACCGGAAACAGAGCCGGATAACGGTGAACGGACACGTGGACCCAAACAAGGTGTT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGTGAACCGGAAACAGAGCCGGATAACGGTGAACGGACACGTGGACCCAAACAAGGTGTT 296
Query 295 GAAGAGAGTGAAGAGCACCGGTAAAAAGGCTGAGTTTTGGCCTTACATACCTCAACATAT 354
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 GAAGAGAGTGAAGAGCACCGGTAAAAAGGCTGAGTTTTGGCCGTACATACCTCAACATAT 356
Query 355 GGTCTATTACCCTTTTGCTCCTGGCATGTACGATAAACGTGCACCTGCAGGCCACATCCG 414
|||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 357 GGTCTATTACCCTTTTGCCCCTGGCATGTACGACAAACGCGCCCCTGCAGGCCACATCCG 416
Query 415 TAATCCCACTCAATCGTTTCCAACAGCAAACGCTCCCGAGGAAAATTACGTTTCCCTCTT 474
|| |||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 417 CAACCCCACTCAATCGTTTCCAACCGCAAACGCTCCCGAGGAAAATTACGTTACTCTCTT 476
Query 475 CAGCGACGACAACGTCCACGCCGCTTGTTCCATCATGTGAGCCAACCAACCAAAAGATTA 534
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 477 CAGCGACGACAACGTCCACGCCGCTTGTTCCATCATGTGAGC-AACCAACCAAAAGATTA 535
Query 535 CTCATAATCTCCATTTTGTAATTTGTATACTTTT---------GTTAAAATCAAAAGGTA 585
|||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 536 TTCATAATCTCTATTTTGTAATTTGTATACTTTTCTTACTTTTGTTAAAATCAAAAGGTA 595
Query 586 ATGTAGGAACTTTGTAATAAAATTATAGAGACAACAC------CGGAATCTATTTGATGG 639
|||||| |||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 596 ATGTAGAAACTTTGTAATAAA-TTATAGAGACAACACTTAAAACGGAATCTATTTGATGG 654
Query 640 TTTATGTTTCGAACAATACT 659
||||||||||||||||||||
Sbjct 655 TTTATGTTTCGAACAATACT 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24169929378
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5