BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17450.1 Length=659 Score E Sequences producing significant alignments: (Bits) Value Ahg488611 jgi|Araly1|488611|fgenesh2_kg.6__1745__AT5G17450.1 948 0.0 > Ahg488611 jgi|Araly1|488611|fgenesh2_kg.6__1745__AT5G17450.1 Length=674 Score = 948 bits (513), Expect = 0.0 Identities = 629/680 (93%), Gaps = 27/680 (4%) Strand=Plus/Plus Query 1 ATACATATTAA-TT-TACACACA--TTTGATC--ATATACACATAGtttttttGCTGACG 54 ||||||||||| || |||||| | ||||||| ||||| |||||||||||||| | | Sbjct 1 ATACATATTAATTTATACACATATTTTTGATCATATATATACATAGTTTTTTTG-T--TG 57 Query 55 AAAAAAGAGAATGGGTGCATTTGATTATATCTCTAGCTTTTGTTCATATACATACGCTAA 114 || | |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct 58 -AAGAGGAGAATGGGTGCATTTGATTATATATCTAGCTTTTGTTCATACACATATGCTAA 116 Query 115 TGCCAAAACCAAGCGTAAGCCATTGCAGACAGTGGATATCAAGGTGAAAATGGACTGTGA 174 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 117 TGCCAAAACCAAGCGTAAGCCATTGCAGACTGTGGATATCAAGGTAAAAATGGACTGTGA 176 Query 175 TGGTTGTGAAAGGAGAGTTAGAAACGTGGTTCGTCGCATGAAAGGGGTGAAATCGGTGGA 234 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 TGGTTGTGAAAGAAGAGTTAGAAACGTGGTTCGTCGCATGAAAGGGGTGAAATCGGTGGA 236 Query 235 GGTGAACCGGAAACAGAGCCGGATAACGGTGAACGGACACGTGGACCCAAACAAGGTGTT 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 GGTGAACCGGAAACAGAGCCGGATAACGGTGAACGGACACGTGGACCCAAACAAGGTGTT 296 Query 295 GAAGAGAGTGAAGAGCACCGGTAAAAAGGCTGAGTTTTGGCCTTACATACCTCAACATAT 354 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 297 GAAGAGAGTGAAGAGCACCGGTAAAAAGGCTGAGTTTTGGCCGTACATACCTCAACATAT 356 Query 355 GGTCTATTACCCTTTTGCTCCTGGCATGTACGATAAACGTGCACCTGCAGGCCACATCCG 414 |||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||| Sbjct 357 GGTCTATTACCCTTTTGCCCCTGGCATGTACGACAAACGCGCCCCTGCAGGCCACATCCG 416 Query 415 TAATCCCACTCAATCGTTTCCAACAGCAAACGCTCCCGAGGAAAATTACGTTTCCCTCTT 474 || |||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| Sbjct 417 CAACCCCACTCAATCGTTTCCAACCGCAAACGCTCCCGAGGAAAATTACGTTACTCTCTT 476 Query 475 CAGCGACGACAACGTCCACGCCGCTTGTTCCATCATGTGAGCCAACCAACCAAAAGATTA 534 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 477 CAGCGACGACAACGTCCACGCCGCTTGTTCCATCATGTGAGC-AACCAACCAAAAGATTA 535 Query 535 CTCATAATCTCCATTTTGTAATTTGTATACTTTT---------GTTAAAATCAAAAGGTA 585 |||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 536 TTCATAATCTCTATTTTGTAATTTGTATACTTTTCTTACTTTTGTTAAAATCAAAAGGTA 595 Query 586 ATGTAGGAACTTTGTAATAAAATTATAGAGACAACAC------CGGAATCTATTTGATGG 639 |||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 596 ATGTAGAAACTTTGTAATAAA-TTATAGAGACAACACTTAAAACGGAATCTATTTGATGG 654 Query 640 TTTATGTTTCGAACAATACT 659 |||||||||||||||||||| Sbjct 655 TTTATGTTTCGAACAATACT 674 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24169929378 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5