BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17460.2
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941254 jgi|Araly1|941254|scaffold_601798.1 1279 0.0
> Ahg941254 jgi|Araly1|941254|scaffold_601798.1
Length=970
Score = 1279 bits (692), Expect = 0.0
Identities = 778/821 (95%), Gaps = 0/821 (0%)
Strand=Plus/Plus
Query 261 CAACTCGATTTTATGCAAGTGGAAGAGGAAAAGACTACAATCTATTTGGTAATGTGAAAC 320
||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 148 CAACTCGATCATATGCAAGTGGAAGAGGTAAAGACTACAATCTATTTGGTAATGCGAAAC 207
Query 321 CAGGTGATGATGACTTTAGAAAAACATGGGAGAAAGAAATGGAGGATGATGATACTCTAT 380
||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 208 CAGGTGATGATGACTTTAGAAAAGCCTGGGAGAAAGAAATGGGGGATGATGATACTCTAT 267
Query 381 GGTCAGGAAGTGAAGACGAAAGCAATGATAAGACAAAACAAGAAAGCGGAAGAAACCGTC 440
|||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||| |
Sbjct 268 GGTCAGGAAGTGAAGACGAAGGCGATGATAATACAAAACAAGAAAGTGGAAGAAACCGCC 327
Query 441 TTGAAAAAGAGATTAAGAAAGCTAGACAACAAGCTAAGGATAGCACCGATCAAATTGATG 500
||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 328 TTGAAAAAGAGATTAAGAAAGCTAGACAACAAGCTAAAGTTAGCTCCGATCAAATTGATG 387
Query 501 GAGATGATAGTGATGAATTGTACAGCGTTTGGTCAGGAAGTGATGAGGAAAAAACGCTGT 560
||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 388 CTGATGATAGTGATGAATTATACAGTGTTTGGTCAGGAAGTGATGAGGAAAAAACGTTGT 447
Query 561 GGACTGGCGATGAAGGTGATGATGACGACGATATTCCAACAGAGCCACGCCCGAACGAGG 620
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GGACAGGCGATGAAGGTGATGATGACGACGATATTCCAACAGAGCCACGCCCGAACGAGG 507
Query 621 CATCTGATAAATACTTAGATAAGTTGTTTGAGTTTGAGGAGAAACCAAAGTACAGGACAA 680
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 508 CATCTGATAAATACTTAGATAAGTTGTTTGAGTTTGAGGAGAAGCCAAAGTACAGGACAA 567
Query 681 TCTCAGAGTTGTTGAAATCTGAAAATGAACCTGAGGAGCTTTCACCCGGTAAAAAGGCGA 740
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 568 TCTCAGAGTTGTTGAAATCTGAGAATGAACCCGAGGAGCTTTCACCCGGTAAAAAGGCAA 627
Query 741 GGAAGCTTGCTGTTGAGAACGCGTTGAAGAAACTGAATAAAGGGCCTGATGGGCGCTACA 800
||||||||||||||||||||||| |||||||||| || |||||||| || ||||| ||||
Sbjct 628 GGAAGCTTGCTGTTGAGAACGCGCTGAAGAAACTAAACAAAGGGCCGGACGGGCGTTACA 687
Query 801 CAAACGTGTGGGAAGTAATGAGTGATGTTGACATTCTGATTGGAGCATTTGAAAACATTA 860
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 688 CAAACGTGTGGGAAGTGATGAGTGATGTCGACATTCTGATTGGAGCGTTTGAAAACATTA 747
Query 861 TCTCGGGACCTGAGTATGAAGAGCTAAGAAAAGGTGGACCCAAGAGACTGAACATGCAGT 920
|||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 748 TCTCAGGACCTGAATATGAAGAGCTAAGGAAAGGTGGACCCAAGAGACTTAACATGCAGT 807
Query 921 TCTTCAAGGATATACAAACTCGAATGAGAGATCCAAACTTCAAGTTCACACCTGAAATAA 980
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 808 TCTTCAAGGATATACAAACTCGCATGAGAGATCCAAACTTCAAATTCACACCTGAAATAA 867
Query 981 AGTTGAAGCCAAAGAGTAAACTAGTGCCTAGGAAGAAATGGCAGAAGGCACAGTCCAGAA 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 AGTTGAAGCCAAAGAGTAAACTAGTGCCTAGGAAGAAATGGCAGAAGGCACAGTCCAGAA 927
Query 1041 TAAGGAAAGCGAAGAAGCGGTAAAAGCTCCACGCTAGTTCA 1081
|||||||||| |||||||||||||||||||| ||| |||||
Sbjct 928 TAAGGAAAGCAAAGAAGCGGTAAAAGCTCCATGCTTGTTCA 968
Score = 195 bits (105), Expect = 1e-48
Identities = 135/149 (91%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 53 AAGCCGTTAAAAGAGAAAAGGATGTTCGCGCGAAGACTCTCCTCTCTATTCTCTATCGTA 112
|||||||| |||| |||||||||||| ||||||||||||| |||||| ||||| ||| ||
Sbjct 1 AAGCCGTT-AAAGGGAAAAGGATGTTGGCGCGAAGACTCTACTCTCTGTTCTCAATCATA 59
Query 113 ACCAAAAGATCACAAAGTCGCTTGCTTTCGTGTCCGA-CAACTTCTGCTCAAAATTGGGT 171
||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 60 ACCAAAAGATCACAAAGTCGCTTGCTTTCGTGTCC-AGCAACAACTGCTCAAAATTGGGT 118
Query 172 ATTTGCTGAGTTTCGTCAGACTATACAAG 200
|||||||| ||||||||||| | ||||||
Sbjct 119 ATTTGCTGGGTTTCGTCAGAATTTACAAG 147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5