BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17470.1
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941256 jgi|Araly1|941256|scaffold_601800.1 582 6e-166
Ahg934242 jgi|Araly1|934242|scaffold_402230.1 357 4e-98
> Ahg941256 jgi|Araly1|941256|scaffold_601800.1
Length=483
Score = 582 bits (315), Expect = 6e-166
Identities = 401/443 (91%), Gaps = 4/443 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGTTGCAGAGATCTTCGAGAGAGTCGACAAAAACAAAGATGGGAAAATCTCATGG 60
|||||| | ||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 21 ATGTCTATCGCAGAAATCTTCGAGAGAGTTGACAAAAACAAAGATGGAAAAATCTCATGG 80
Query 61 GACGAATTTGCTGAAGCGATTCGCGCCTTTTCTCCTTCAATAACATCTGAAGAAATCGAT 120
|| |||||||| |||||||||||||| |||||||||| |||||||||||||||| | |||
Sbjct 81 GATGAATTTGCCGAAGCGATTCGCGCTTTTTCTCCTTTAATAACATCTGAAGAACTTGAT 140
Query 121 AACATGTTCAGAGAGATTGATGTCGACGGTGATAACCAAATCGACGTTGCGGAATATGCT 180
| |||||||||||| |||| ||||||||||||||||||||||| | |||||||| ||||
Sbjct 141 CAGATGTTCAGAGAGCTTGACGTCGACGGTGATAACCAAATCGATGCTGCGGAATTTGCT 200
Query 181 TCTTGCTTGATGCTTGGTGGTGAAGGA-AATAAAGAGGACGAAGACATTGTTATGAAAGA 239
|| |||||||||||||| ||||||||| | ||||| || ||||||| ||||||||||||
Sbjct 201 TCGTGCTTGATGCTTGGCGGTGAAGGAGGA-AAAGACGATGAAGACACTGTTATGAAAGA 259
Query 240 AGCTTTTGATTTGTATGACATTGATGGTGATGGAAAAATATCGGCGAGTGAGATTCATGT 299
|||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 260 AGCTTTTGATTTGTATGATATTGATGGTGACGGAAAGATATCCGCGAGTGAGATTCATGT 319
Query 300 GGTATTGAAACGTCTTGGAGAAAAACAAACAATAGC-AGAATGCATTGCGATGGTTCGAG 358
||||||||||||||||||||| || || ||||| || ||||||| ||| |||||||||||
Sbjct 320 GGTATTGAAACGTCTTGGAGAGAAGCATACAAT-GCAAGAATGCGTTGTGATGGTTCGAG 378
Query 359 CCGTTGATGCAGATGGTGATGGCTTTGTGAGTTTTGAAGAGTTTAAGACTATGATGAGTT 418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 379 CCGTTGATGCAGATGGTGATGGCTTTGTGAGTTTTGAAGAGTTTAAGATTATGATGAGTT 438
Query 419 GTAACAACAAAAAATTACAATGA 441
|||||||| ||||| || ||||
Sbjct 439 CTAACAACATAAAATCACTATGA 461
> Ahg934242 jgi|Araly1|934242|scaffold_402230.1
Length=481
Score = 357 bits (193), Expect = 4e-98
Identities = 344/418 (82%), Gaps = 6/418 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGTTGCAGAGATCTTCGAGAGAGTCGACAAAAACAAAGATGGGAAAATCTCATGG 60
|||||| | |||||||| ||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 24 ATGTCTATGGCAGAGATTTTCGAGAGAGTTGACAAAAACAAAGATGGAAAAATTTCATGG 83
Query 61 GACGAATTTGCTGAAGCGATTCGCGCCTTTTCTCCTTCAATAACATCTGAAGAAATCGAT 120
||||||||||| || |||||||||| |||||||| ||||||| ||||||| || |||
Sbjct 84 GACGAATTTGCGGAGGCGATTCGCGTTTTTTCTCCCAAAATAACAGCTGAAGAGATTGAT 143
Query 121 AACATGTTCAGAGAGATTGATGTCGACGGTGATAACCAAATCGACGTTGCGGAATATGCT 180
|| ||||||| || |||||||||| ||||| ||||| || | ||| | ||||
Sbjct 144 AAGATGTTCATAGTTCTTGATGTCGATGGTGACGGTCAAATAGATGCAATGGAGTTTGCT 203
Query 181 TCTTGCTTGATGCTTGGTGGTGAAGGA-AATAAAGAGGACGAAGACA-TTGTTATGAAAG 238
|| || |||||| || || | |||| || ||||| || ||||| | ||||||||||||
Sbjct 204 TCGTGTTTGATGGTTAACGGCGGAGGAGAA-AAAGATGATGAAGA-AGTTGTTATGAAAG 261
Query 239 AAGCTTTTGATTTGTATGACATTGATGGTGATGGAAAAATATCGGCGAGTGAGATTCATG 298
|||||||||||||||| || || ||||||||||| || || |||||||||||||||||||
Sbjct 262 AAGCTTTTGATTTGTACGATATCGATGGTGATGGGAAGATTTCGGCGAGTGAGATTCATG 321
Query 299 TGGTATTGAAACGTCTTGGAGAAAAACAAACAATAGCAG-AATGCATTGCGATGGTTCGA 357
|||||||||| || |||||||| ||||| ||||| | || |||| || ||||||||| |
Sbjct 322 TGGTATTGAAGCGACTTGGAGAGAAACATACAATGG-AGGAATGTGTTACGATGGTTCAA 380
Query 358 GCCGTTGATGCAGATGGTGATGGCTTTGTGAGTTTTGAAGAGTTTAAGACTATGATGA 415
||||||||| ||| |||||||| ||||| || || |||||||||||| ||||||||
Sbjct 381 GCCGTTGATAAAGACGGTGATGGTTTTGTTAGCTTCGAAGAGTTTAAGGTTATGATGA 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15910880613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5