BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17480.1
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941257 jgi|Araly1|941257|scaffold_601801.1 411 2e-114
Ahg927858 jgi|Araly1|927858|scaffold_300315.1 239 8e-63
> Ahg941257 jgi|Araly1|941257|scaffold_601801.1
Length=295
Score = 411 bits (222), Expect = 2e-114
Identities = 243/253 (96%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGATGCAACGGAGAAAGCCGAGCACGACCGTATTTTCAAGAAATTTGATGCTAAT 60
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 22 ATGGCTGATGCGACGGAGAAAGCCGAGCACGACCGTATATTCAAGAAATTTGATGCTAAC 81
Query 61 GGTGACGGAAAAATTTCAGCAGCCGAACTCGAAGAAGCTCTTAAGACACTTGGTTCGGTA 120
|| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 82 GGCGATGGAAAAATATCAGCAGCCGAACTCGAAGAAGCTCTTAAGACACTTGGCTCGGTA 141
Query 121 ACAG-CTGATGACGTCAAACGTATGATGGCTGAAATTGATACTGATGGTGATGGAAACAT 179
|| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 142 AC-GCCTGATGACGTCAAGCGTATGATGGCTGAAATTGATACTGATGGTGATGGAAACAT 200
Query 180 ATCGTATCAAGAATTCACTGATTTTGCAGGTGCCAATCGTGGACTTATGAAGGATGTTGC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 ATCGTATCAAGAATTCACTGATTTTGCAGGTGCCAATCGTGGACTTATGAAGGATGTTGC 260
Query 240 CAAAATTTTCTAA 252
|||||||||||||
Sbjct 261 CAAAATTTTCTAA 273
> Ahg927858 jgi|Araly1|927858|scaffold_300315.1
Length=292
Score = 239 bits (129), Expect = 8e-63
Identities = 214/255 (84%), Gaps = 6/255 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGATGCAACGGAGAAAGCCGAGCACGACCGTATTTTCAAGAAATTTGATGCTAAT 60
|||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 21 ATGGCTGATGCAACAGAAAAAGCTGAGCATGACCGTATTTTCAAGAAATTTGATGCTAAT 80
Query 61 GGTGACGGAAAAATTTCAGCAGCCGAACTCGAAGAAGCTCTTAAGACAC-TTGGTTCGGT 119
|| || |||||||| || || ||||| || | ||| ||||| |||| || |||| |||||
Sbjct 81 GGAGATGGAAAAATCTCTGCGGCCGAGCTTGGAGATGCTCTGAAGA-ACCTTGGCTCGGT 139
Query 120 -A-ACAGCTGATGACGTCAAACGTATGATGGCTGAAATTGATACTGATGGTGATGGAAAC 177
| ||| | || ||| | || ||||||||||| || |||||||| ||||| |||||| ||
Sbjct 140 CACACA-C-GAGGACATTAAGCGTATGATGGCCGAGATTGATACCGATGGCGATGGATAC 197
Query 178 ATATCGTATCAAGAATTCACTGATTTTGCAGGTGCCAATCGTGGACTTATGAAGGATGTT 237
|| ||||| |||||||| ||||||| ||| ||||||||||||| |||||||| || ||
Sbjct 198 ATCTCGTACCAAGAATTTTCTGATTTCGCAAGTGCCAATCGTGGTCTTATGAAAGACGTC 257
Query 238 GCCAAAATTTTCTAA 252
||||| |||||||||
Sbjct 258 GCCAAGATTTTCTAA 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8745111769
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5