BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17490.1
Length=2015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488615 jgi|Araly1|488615|fgenesh2_kg.6__1749__AT5G17490.1 2623 0.0
> Ahg488615 jgi|Araly1|488615|fgenesh2_kg.6__1749__AT5G17490.1
Length=1957
Score = 2623 bits (1420), Expect = 0.0
Identities = 1793/1967 (91%), Gaps = 50/1967 (3%)
Strand=Plus/Plus
Query 40 TCTCTTTTACTTACACTCTCCAGGTCCCTCACTTCCCTCATTGGACCTCTCTAACTCTCC 99
|||||||||||||||||||||||||| ||||||||||||||||| || || |
Sbjct 26 TCTCTTTTACTTACACTCTCCAGGTCTCTCACTTCCCTCATTGG---------AC-CT-C 74
Query 100 TCTCTTACCTTCTCCTGTTTAAATTCTTCTCCTTTCTTTCCACAATTTCTGTCTAACCAA 159
|| ||| | | | |||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 75 TC-CTT--C-T-T-CTGTTTAAATTCGTCTCCTTTCTTTCCACAATTTTTGCCTAACCAA 128
Query 160 TTCCAACACCAAAAAATTC--CATTTCTTGACGATGAAACGAAGCCATCAAGAAA-CGTC 216
|||| | ||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 129 CACCAA-A-AAAAAAATTCAACATTTCTTGACGATGAAACGAAGCCATCAAGAAACCTTC 186
Query 217 TGTAGAAGAAGAAGCTCCTTCAATGGTGGAGAAGTTAGAAAATGGTTGTGGTGGTGGTGG 276
||||||||||||||||| |||||| ||||||| ||||| | || || ||||||||||
Sbjct 187 -GTAGAAGAAGAAGCTCCGTCAATGACGGAGAAGCTAGAAGGTAGTGGTTGTGGTGGTGG 245
Query 277 AGACGATAACATGGACGAGTTTCTTGCTGTTTTGGGTTACAAGGTTCGATCTTCAGACAT 336
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 246 AGACGATAACATGGACGAGCTTCTTGCTGTTTTGGGCTACAAGGTTCGATCTTCAGACAT 305
Query 337 GGCAGATGTTGCACAGAAGCTTGAACAGCTTGAAATGGTCTTGTCCAATGATATTGCCTC 396
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 306 GGCTGATGTTGCACAGAAGCTTGAACAGCTTGAAATGGTCTTGTCCAATGATATTGGTTC 365
Query 397 TTCTAGTAATGCCTTCAATGACACCGTTCATTACAATCCTTCTGATCTCTCCGGTTGGGC 456
||||| ||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 366 TTCTAATAATGCCTTAAACGACACTGTTCATTACAATCCTTCTGATCTCTCCGGTTGGGC 425
Query 457 TCAGAGCATGCTCTCGGATCTTAATTACTACCCGGATCTTGACCCGAACCGGATTTGCGA 516
||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 426 TCAGAGCATGCTCTCCGAGCTTAACTACTACCCGGATCTCGACCCGAACCGGATTTGCGA 485
Query 517 TCTGAGACCAAT-CACAGACGACGATGAGTGTTGCAGTAGCAATAGTAACAGCAACAAGA 575
|||||||||||| || ||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 486 TCTGAGACCAATCCA-AGACGACGACGAGTGTTGCAGTAGC---AGTAACAGCAACAAGA 541
Query 576 GGATTCGACTCGGTCCTTGGTGTGACTCAGTGACCAGCGAGTCAACTCGTTCCGTGGTGC 635
|||||||||||| |||||||| ||||||||||| |||||| |||||||||||||| || |
Sbjct 542 GGATTCGACTCGCTCCTTGGTATGACTCAGTGAGCAGCGACTCAACTCGTTCCGTCGTCC 601
Query 636 TTATCGAGGAGACAGGAGTTAGACTCGTTCAGGCGCTAGTGGCCTGCGCCGAGGCGGTTC 695
||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 602 TTATCGAGGAGACCGGAGTCAGACTCGTCCAGGCGCTAGTGGCCTGCGCCGAGGCGGTCC 661
Query 696 AGC-TGGAGAATCTGAGCCTCGCGGATGCTCTCGTCAAGCGCGTGGGATTACTCGCGGCT 754
||| | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 662 AGCAT-GAGAATCTGAGCCTCGCGGATGCTCTCGTGAAGCGCGTGGGATCACTCGCGGCT 720
Query 755 TCTCAAGCCGGAGCCATGGGGAAAGTCGCTACCTACTTCGCCGAAGCCCTAGCTCGTCGA 814
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 721 TCTCAAGCGGGAGCGATGGGGAAAGTCGCCACCTACTTCGCCGAAGCCCTAGCTCGTCGG 780
Query 815 ATTTACCGGATTCATCCTTCCGCCGCCGCCATTGATCCTTCCTTCGAAGAGATTCTTCAG 874
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 781 ATTTACCGGATTCATCCTTCCTCCGCCGCCATTGATCCTTCCTTTGAAGAGATTCTTCAG 840
Query 875 ATGAACTTCTACGACTCGTGTCCCTACCTGAAATTCGCTCATTTCACGGCCAATCAGGCG 934
||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct 841 ATGAATTTCTACGACTCGTGTCCTTACCTCAAATTCGCTCATTTCACAGCCAATCAAGCG 900
Query 935 ATTCTAGAAGCTGTTACGACGTCGCGTGTCGTACACGTAATCGATCTAGGGCTTAATCAA 994
||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 901 ATTCTAGAAGCCGTTACGACGTCGCGTGGCGTACACGTTATCGATCTAGGGCTTAATCAA 960
Query 995 GGTATGCAATGGCCGGCGTTAATGCAAGCCTTAGCTCTCCGACCCGGTGGTCCACCGTCG 1054
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 GGGATGCAATGGCCGGCGTTAATGCAAGCCTTAGCTCTCCGACCCGGTGGTCCTCCGTCG 1020
Query 1055 TTTCGTCTCACCGGCGTTGGGAATCCGTCGAATCGAGAAGGGATTCAAGAGTTAGGTTGG 1114
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct 1021 TTTCGTCTCACCGGCGTTGGGACTCCGTCGAATCGTGACGGGATTCAAGAGTTAGGTTGG 1080
Query 1115 AAGCTAGCTCAGCTGGCTCAAGCCATCGGCGTCGAATTCAAATTCAATGGTCTAACGACG 1174
||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 1081 AAGCTAGCTCAGCTGGCTCAAGCCATCGGCGTCGAATTCGAGTTCAATGGTCGAACGACG 1140
Query 1175 GAGAGGTTATCCGATTTAGAACCGGATATGTTCGAGACCCGAACCGAATCGGAGACTCTA 1234
||||| ||||||||||| |||||| ||||||||||||||||| |||| ||||||||| ||
Sbjct 1141 GAGAGATTATCCGATTTGGAACCGTATATGTTCGAGACCCGACCCGAGTCGGAGACTTTA 1200
Query 1235 GTGGTTAATTCGGTTTTCGAGCTTCACCCGGTTTTATCCCAACCCGGTTCGATCGAAAAG 1294
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1201 GTGGTTAATTCGGTTTTCGAGCTTCACCCGGTTTTATCGCAACCCGGTTCGATCGAAAAG 1260
Query 1295 CTGTTAGCGACGGTTAAGGCGGTTAAACCGGGTCTCGTAACAGTGGTGGAACAAGAAGCG 1354
||||||| |||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct 1261 CTGTTAGTGACGGTTAAGGCGGTTAAACCGAGTATCGTAACGGTGGTGGAACAAGAAGCG 1320
Query 1355 AACCATAACGGTGACGTTTTCTTAGACCGGTTTAACGAAGCGCTTCACTATTACTCGAGC 1414
||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1321 AACCATAACGGCGCCGTTTTCTTAGACCGGTTTAACGAAGCGCTACACTATTACTCGAGC 1380
Query 1415 TTGTTCGACTCGCTCGAAGATGGTGTTGTGATACCGAGTCAAGACCGAGTCATGTCGGAG 1474
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1381 TTGTTTGACTCGCTCGAAGATGGTGTTGTCTTACCGAGTCAAGACCGAGTCATGTCGGAG 1440
Query 1475 GTTTACTTAGGGAGACAGATATTGAACTTGGTGGCGACGGAAGGAAGCGATAGGATCGAG 1534
||||||||||||||||||| |||||| |||||||| ||||||||| ||| ||||||||
Sbjct 1441 ATTTACTTAGGGAGACAGATTTTGAACGTGGTGGCGGCGGAAGGAATTGATCGGATCGAG 1500
Query 1535 CGACACGAGACGCTGGCTCAGTGGCGAAAACGTATGGGATCCGCCGGGTTTGACCCGGTT 1594
|| || ||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 1501 CGGCATGAGACACTGGCTCAGTGGCGGAAACGGATGGAATCCGCCGGGTTTGACCCGGTT 1560
Query 1595 AACCTCGGATCAGACGCGTTTAAGCAAGCGAGTTTGCTATTGGCGTTATCTGGCGGTGGA 1654
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1561 AATCTCGGATCAGACGCGTTTAAGCAAGCGAGTTTGCTATTGGCGTTATCTGGCGGCGGA 1620
Query 1655 GATGGATACAGAGTGGAGGAGAACGACGGAAGCCTAATGCTTGCGTGGCAAACGAAACCT 1714
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1621 GATGGATACAGAGTGGAGGAGAACGACGGAAGCCTTATGCTTGCGTGGCAGACGAAACCG 1680
Query 1715 CTAATCGCTGCATCGGCGTGGAAACTAGCGGCGGAGTTGCGGCGGTAGATACGT-CGTCA 1773
|| ||||| ||||||||||||||||| |||| ||||||||||||||||| | | |||||
Sbjct 1681 CTCATCGCCGCATCGGCGTGGAAACTGGCGGTGGAGTTGCGGCGGTAGAGAT-TACGTCA 1739
Query 1774 TAAAGAGGAGAAGAAA-AAAGACTTAGCGAA--CGTGACCTT--ATGTTTTTATTTTACT 1828
|| | | | |||||| ||| | || || || ||||||||| |||||||| |||||||
Sbjct 1740 TAGATA--A-AAGAAATAAA-ATTT-GCAAAAACGTGACCTTTTATGTTTTTGTTTTACT 1794
Query 1829 TTAACTTACCCCAGTAGTTTCGTTTTGTGACAATTTCGCCCGAAATATTCCGTGCCTTAT 1888
|| || ||||||| |||||||||||| ||||||||||||||||| |||||| ||| || |
Sbjct 1795 TTGACGTACCCCACTAGTTTCGTTTTATGACAATTTCGCCCGAATTATTCCTTGCTTT-T 1853
Query 1889 ACTTTTGGGACCCAGTTGGTTCGTTGGTCGT-G-G--AGATTCGAGAACGAGGAACATGT 1944
||||||||||||||||||||||||||||||| | | |||||||| || |||||||||||
Sbjct 1854 ACTTTTGGGACCCAGTTGGTTCGTTGGTCGTCGAGCGAGATTCGAAAATGAGGAACATGT 1913
Query 1945 GTGTATGTAACAACAGCACGAGCAAGTGTTTTCATAGTTTGAATAAA 1991
||| |||||||| |||||||| |||||||| || |||||||||||
Sbjct 1914 GTGCATGTAACA---GCACGAGCTAGTGTTTTGATTGTTTGAATAAA 1957
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1 ACATGCGAAATTATAATGGCCTGCCTCTCTT 31
|||||||||||||||||||||||||||||||
Sbjct 1 ACATGCGAAATTATAATGGCCTGCCTCTCTT 31
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75761497305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5