BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17500.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488616 jgi|Araly1|488616|fgenesh2_kg.6__1750__AT5G17500.1 2484 0.0
> Ahg488616 jgi|Araly1|488616|fgenesh2_kg.6__1750__AT5G17500.1
Length=1584
Score = 2484 bits (1345), Expect = 0.0
Identities = 1507/1586 (95%), Gaps = 7/1586 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAAAGCAA--TC-GCTTTAACTGTCTTTTTGTTCTTATTCTTGTCATTAATATCT 57
||||||||| ||| || |||||||| || ||||||||||| ||||||||| |||||||
Sbjct 1 ATGGCAAAAACAATCTCTCCTTTAACTCTCGTTTTGTTCTTACTCTTGTCATCAATATCT 60
Query 58 CTAACCCTAGCAACAGATTATCCACTATTCACAAAGTCTCGATGGATCGTAAACAACAAG 117
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 61 CTAACCCTAGCGACAGATTATCCACTATTCACAAAGTCGCGATGGATCGTAAACAAGAAG 120
Query 118 GGCCACCGCGTGAAGCTAGCTTGCGCGAACTGGCCTTCGCACCTCAAGCCAGTGGTAGCA 177
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 121 GGCCACCGCGTGAAGCTAGCTTGCGCAAATTGGCCTTCGCACCTCAAGCCAGTGGTAGCC 180
Query 178 GAGGGGCTGAGCAGCCAGCCAATGGATTCAATATCGAAAAAGATAAAAGACATGGGATTC 237
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 181 GAGGGGCTGAGCAGCCAGCCAATGGATTCGATATCGAAGAAGATAAAAGACATGGGCTTC 240
Query 238 AATTGTGTTAGGCTCACTTGGCCACTTGAATTAATGATTAATGACACTTTAGCCTTTAAT 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AATTGTGTTAGGCTCACTTGGCCACTTGAGTTAATGATTAATGACACTTTAGCCTTTAAT 300
Query 298 GTTACCGTGAAACAATCATTTGAGAGATATGGATTGGATCATGAGCTTCAAGGGATTTAC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTACCGTGAAACAATCATTTGAGAGATATGGATTGGATCATGAGCTTCAAGGGATTTAC 360
Query 358 ACTCACAATCCATACATTGTCAATACTCCTCTCATCAATGTCTTTCAGGCTGTGGTGTAT 417
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 361 ACTCACAATCCATCCATTGTCAATATTCCTCTCATCAATGCCTTTCAGGCTGTGGTGTAT 420
Query 418 AGTCTTGGGAGGCATGATGTGATGGTGATACTTGACAACCACAAGACCGTACCGGGGTGG 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 AGTCTTGGGAGGCATGATGTGATGGTGATACTTGACAACCACAAGACCGTACCGGGTTGG 480
Query 478 TGTTGTAGCAACGATGACCCGGACGCGTTCTTTGGCGACCCAAAATTCAACCCGGATCTA 537
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 TGTTGCAGCAACAATGACCCGGACGCGTTCTTTGGCGACCCAAAATTCAACCCCGATCTA 540
Query 538 TGGATGTTGGGTCTTAAGAAGATGGCCACAATATTTATGAACGTGAAAAACGTTGTTGGT 597
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 541 TGGATGTTGGGTCTTAAGAAGATGGCCACAATCTTTATGAACGTGAACAACGTTGTTGGT 600
Query 598 ATGAGCCTGAGGAATGAACTTAGAGGCTACAATCATACATCAAAAGATTGGTACAAGTAC 657
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 ATGAGCCTGAGGAATGAACTTAGAGGCTACAATCATACAGCAAAAGATTGGTACAAGTAC 660
Query 658 ATGCAAAAAGGAGCAGAAGCAGTGCATACATCAAACCCTAACGTACTGGTCATACTCTCA 717
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 ATGCAAAAAGGAGCAGAAGCAGTGCACACATCAAACCCTAACGTACTGGTCATACTCTCA 720
Query 718 GGGCTTAACTTCGATGCTGACCTAAGTTTCTTAAAAGATCGTCCAGTGAATCTTAGCTTC 777
|||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 GGGCTTAATTTTGATGCTGACCTAAGTTTCTTACAAGATCGTCCAGTGAATCTTAGCTTC 780
Query 778 AAGAAAAAACTTGTCTTGGAGCTTCATTGGTATTCTTTCACTGACGGTACTGGTCAATGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGAAAAAACTTGTCTTGGAGCTTCATTGGTATTCTTTCACTGACGGTACTGGTCAATGG 840
Query 838 AAGTCACACAATGTCAACGACTTTTGCAGCCAAATGTTCTCTAAGGAGCGTCGTACCGGC 897
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 841 AAGTCACACAATGTCAACGACTTTTGCAGCCAAATGTTCGCTAAGGAGCATCGTACCGGT 900
Query 898 GGTTTTGTTCTCGACCAAGGCTTTCCTTTGTTCTTGAGCGAGTTTGGGACCGATCAAAGA 957
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGTTTCGTTCTCGAACAAGGCTTTCCTTTGTTCTTGAGCGAGTTTGGGACCGATCAAAGA 960
Query 958 GGTGGCGATCTTGAAGGAAACAGGTACATGAATTGTATGTTGGCATGGGCGGCCGAGAAA 1017
||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||| || |||
Sbjct 961 GGTGGGGATTTTGAAGGAAACAGGTACATGAGTTGCATGTTGGCATGGGCGGCTGAAAAA 1020
Query 1018 GATTTGGATTGGGCGGTTTGGGCGGTTACGGGAGTTTATTATTTCCGCGAAGGCAAACGT 1077
||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1021 GATATAGATTGGGCGGTTTGGGCGCTTACGGGAGTTTATTATTTCCGCGAAGGCAAACGC 1080
Query 1078 GGTGTAGTTGAAGCTTACGGTATGTTAGATGCGAATTGGCATAATGTTCATAACTATACT 1137
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 GGTGTACTTGAAGCTTACGGTATGTTAGATGCGAATTGGCACAATGTTCATAACTATACT 1140
Query 1138 TATCTCCGTAGGCTCTCCGTCATTCAACCACCGCACACAGGACCCGGTGTAAAGCACAAT 1197
|||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1141 TATCTCCGAAGGCTCTCCGTCATTCAACCACCGCACAAAGGACCCGGTATAAAGCACAAT 1200
Query 1198 CATCACAAGAAAATATTTCATCCGTTAACCGGACTCTGCCTAGTGAGAAAGTCA-CACTG 1256
||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||
Sbjct 1201 CATCACAAGAAAATATTCCATCCGTTAACGGGACTCTGCCTAGTGAGAAAGTCATCA-TG 1259
Query 1257 CCATGAGTCCGAGCTCACGTTAGGTCCATGCACAAAGGACGAACCGTGGAGCTATTCTCA 1316
| ||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||||||
Sbjct 1260 CTATGAGTCCGAGCTCATGTTAGGTCCGTGCACAAAGGGCGAACCTTGGAGCTATTCTCA 1319
Query 1317 TGGAGGCATACTTGAGATCAGACGCGGTCACAAATCTTGCTTAGAAGGAGAAACAGCGGT 1376
|||||||||||||||||||| | ||||||||||||||||||||||||| ||||| |||||
Sbjct 1320 TGGAGGCATACTTGAGATCAAAGGCGGTCACAAATCTTGCTTAGAAGGCGAAACTGCGGT 1379
Query 1377 CGGAAAAAGTGTGAAACTTGGCAGGATATGCACAAAGATTGA-GCAAATATCGGCCACAA 1435
|||| ||||||||||||||||| || ||||||||||||| | |||||||||||||||||
Sbjct 1380 GGGAAGAAGTGTGAAACTTGGCAAGAAATGCACAAAGATT-ATGCAAATATCGGCCACAA 1438
Query 1436 AGATGCATTTGTCGTTCAACACTAGTGACGGTTCGTTGGTATGCTTAGACGTGGATTCGG 1495
|||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||| |
Sbjct 1439 AGATGCATTTGTCGTTGAAGACTAATGATGGTTCGTTGGTATGCTTAGACGTGGATTCAG 1498
Query 1496 ATAACAATGTTGTTGCTAATTCTTGCAACTGTTTGACCGGAGATACTACTTGTGAACCTG 1555
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1499 ATAACAATGTTGTTGCTAATTCTTGCAAGTGTTTGACCGGAGATATTACTTGTGAACCTG 1558
Query 1556 CAAGCCAATGGTTCAAAATCTTCTGA 1581
||||||||||||||||||||||||||
Sbjct 1559 CAAGCCAATGGTTCAAAATCTTCTGA 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5