BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17510.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488617 jgi|Araly1|488617|fgenesh2_kg.6__1751__AT5G17510.1 1829 0.0
> Ahg488617 jgi|Araly1|488617|fgenesh2_kg.6__1751__AT5G17510.1
Length=1482
Score = 1829 bits (990), Expect = 0.0
Identities = 1176/1261 (93%), Gaps = 31/1261 (2%)
Strand=Plus/Plus
Query 53 atGGAGGACACGAAG---CCACCATTGGGAGGTaacaa--c-aatcctcagcagcagcag 106
||||||||||||||| |||||||||||||||||||| | | | ||||||||||||
Sbjct 1 ATGGAGGACACGAAGCCACCACCATTGGGAGGTAACAATCCTCAGCAGCAGCAGCAGCAG 60
Query 107 caacaacaacaacttctctatcaacaccaactacaacaacaacagagacaacaacaaatg 166
|||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 61 CAACAACAACAACTTCTCTATCAACACCAA-T-----TACAACAGCGACAACAACAAATG 114
Query 167 cttctattgcagcaattgc---a--a--aa-a-caacaacagcaacaagcagcaaTGTCT 217
||||| ||||| ||||||| | | || | |||||||||||||||||||||||||||
Sbjct 115 CTTCTCTTGCAACAATTGCAAAAGCAGCAACATCAACAACAGCAACAAGCAGCAATGTCT 174
Query 218 AGATTCCCGTCGAACATCGACGTGCATCTCCGGCCACCGGGGTTGATTCAGAACCGACCC 277
|||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 175 AGATTCCCATCGAACATCGACGTTCATCTCCGTCCACCGGGTTTGATTCAGAACCGACCC 234
Query 278 ATTAATCCTCCGCCTCAGCAGAATCCTACCCCTAACCCTAATTTGGGACAGCAGACACCG 337
|||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||
Sbjct 235 ATTAATCCTCCGCCTCAGCAGAATCCTAACCCTAACCCTAATTTGGGACAACATACACCG 294
Query 338 AATTTTcaacagcagcagcagcagaatgtatcgagtcagcagatgatgcagcaacaacaa 397
||||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||
Sbjct 295 AATTTTCAACAGCAGCAGCAG--G-TTGTATCGAGCCAGCAGATGATGCAGCAGCAACAA 351
Query 398 caacagcagcagcagcagAAATTGATGAGGCCATTGAATCACATCGAGCTTCAATGCGCT 457
| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 352 C-A-A-CAGCAGCAGCAGAAATTGATGCGGCCATTGAATCACATCGAGCTTCAATGCGCT 408
Query 458 TATCAGGACGCTTGGCGTGTTTGTCACCCCAATTTTAAACAACCCTTCTCTTCTCTCGAA 517
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 409 TATCAGGACGCTTGGCGTGTTTGTCACCCGAATTTTAAACAACCTTTCTCTTCTCTTGAA 468
Query 518 GATGCTTGCGAGAGATTATTACCTTATCATGTCGTAGCAGATTACGAAGCAGAAGAGGAT 577
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 469 GATGCTTGCGAGAGATTATTACCATATCATGTCGTAGCAGATTACGAAGCAGAAGAGGAT 528
Query 578 GATAGAATCCTTGATTCAGACCCAACAGGCCAGGCCTTGTCCCGCTCTCAACAATGGGAT 637
||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 529 GATAGAATCCTTGATTCGGATCCAACAGGCCAGGCCTTATCTCGCTCTCAACAATGGGAT 588
Query 638 AACAACATTGCTGCGAAAGTTGCTGAATTCACGGCAACGTTTGAGAAGCAAGCACTAGCT 697
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 589 AATAACATTGCTGCTAAAGTTGCTGAATTCACGGCAACGTTTGAGAAACAAGCCCTAGCT 648
Query 698 TTTAACATAATAACTCGAAAGAGAGCTATGGGAGAATTCAGATCTGAGGAAAGGTTGATG 757
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 649 TTTAACATAATAACTCGAAAGCGAGGAATGGGAGAATTCAGATCTGAGGAAAGGTTGATG 708
Query 758 GTAGAACAAGCTTTGCTACAAGATGAAAGGAAAGCGTTGATTGAACTGAAAGCAGAAATG 817
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 709 GTAGAACAAGCTTTGCTACAAGAAGAAAGGAAATCGTTGATTGAACTGAAAGCAGAAATG 768
Query 818 GATAGGGAGAAGGCTGGCCGGGAGGCTCAGGAGGCTAAGCTGCGGATGGCGGCTTTAGCT 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GATAGGGAGAAGGCTGGCCGGGAGGCTCAGGAGGCTAAGCTGCGGATGGCGGCTTTAGCT 828
Query 878 CAAGCTGGACAGTCTCAATCTCATGCTGAGATAATGGCTCGTAACCCATTAAGGGCTAAT 937
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 829 CAAGCTGGACAGTCTCAATCTCATGCTGAGATAATGGCTCGTAATCCATTGAGGGCTAAT 888
Query 938 GCGGTTGGAAATCAGGGCAGCAATATTCAGCTTAGCCACGAGATGGGAGAACAGGGACGT 997
|||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 889 GCGGTTGGGAATCAGGGCAGTAATATTCAGCTTAGCCATGAGATGGGGGAACAGGGACGT 948
Query 998 AACATGAACCCTGATGAGATGATGAATGGATGGGGAAACAACAGTCAGAGAGAGGACAAG 1057
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 949 AACATGAACCCTGATGAGATGATGAATGGATGGGGAAACAACAGCCAGAGAGAGGACAAG 1008
Query 1058 GAACCTTCAGAAGATTTCTTGAATGATGAGGAGAATGAGAATGGAGAGACAGGGGAACAA 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GAACCTTCAGAAGATTTCTTGAATGATGAGGAGAATGAGAATGGAGAGACAGGGGAACAA 1068
Query 1118 GAAAACTGGCGTGAAGCAGGAGAATTTGATTTGAATAGCCGGTAAATGACCAAGGTGAAG 1177
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GAAAACTGGCGTGAGGCAGGAGAATTTGATTTGAATAGCCGGTAAATGACCAAGGTGAAG 1128
Query 1178 ACTATTTGCAGTCTCATGTATTAGAAACTGGAAAGGAAATTACAGTTGCTCTTGATATCA 1237
|||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||
Sbjct 1129 ACTATTTGCAGTCTCATGTACTCGAAACTAGAAAGGAAATTACAGCTGCTCTTGATATCA 1188
Query 1238 CTCCA-ATTTCTATAGTTTCAAGCTGCTATATATGCCAGGTTCAGGTCAAGTATATGGGT 1296
||| | || || | || ||||||||||||||| || ||||||||||||||||||||||
Sbjct 1189 CTC-AGATAAGTAGA-TT-CAAGCTGCTATATATACCGGGTTCAGGTCAAGTATATGGGT 1245
Query 1297 A 1297
|
Sbjct 1246 A 1246
Score = 339 bits (183), Expect = 5e-92
Identities = 222/240 (93%), Gaps = 5/240 (2%)
Strand=Plus/Plus
Query 1351 TACCA-ATGATGGTTCCAAGTAAGCATTTCTTGTATCTGTTTGATGTTTTGTAGCATAAG 1409
||||| |||||||||||||||||||||| |||||||||||| |||||||||||| ||||
Sbjct 1245 TACCAGATGATGGTTCCAAGTAAGCATTGATTGTATCTGTTTAATGTTTTGTAGCTTAAG 1304
Query 1410 TTAGATGTGTGCATTACATGTTGATGATTAGTGTCTTCATGATACATGGAGATGGAGAGG 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 TTAGATGTGTGCATTACATGTTGATGATTAGTGTCTTCATGATACATGGAGATGGAGAGG 1364
Query 1470 CTGGTTACCTAGTAACCGAATCTTGTAGAAGGTGTAAGAGATCCAGATAGTAAAGCTTAG 1529
||||||| ||| |||| |||||||||| ||||||||||||| ||||||| ||||||||||
Sbjct 1365 CTGGTTATCTA-TAACTGAATCTTGTAAAAGGTGTAAGAGAACCAGATAATAAAGCTTAG 1423
Query 1530 TAGCTAAAATAGAT--TATCATATGTAAGTTACTATTACAGAATTGTATTGGTTATGTAT 1587
||||||| |||| | ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1424 TAGCTAAGATAGTTAATAT-ATATGTAAGTTACTATTACAGAATTGTATTGGCCATGTAT 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5