BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17520.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488618 jgi|Araly1|488618|fgenesh2_kg.6__1752__AT5G17520.1 2161 0.0
> Ahg488618 jgi|Araly1|488618|fgenesh2_kg.6__1752__AT5G17520.1
Length=1514
Score = 2161 bits (1170), Expect = 0.0
Identities = 1347/1429 (94%), Gaps = 26/1429 (2%)
Strand=Plus/Plus
Query 28 CTCACTTACATGATTTCACTGATGTACCCTTCTTCTTCCTCCTCTCTGTTCCAAACCCAA 87
|||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1 CTCACTCACATGATTTCACTGATATACCCTTCTTCGTCCTCCTCTCTGTTCCAAA-CCAA 59
Query 88 GTACTACAATAA---TTCTCTCACATTCCCATGGAAGGTAAAGCCATCGCGACGTCTCTC 144
|||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 60 GTACTACAATAATTCTTCTCTCACATTCCCATGGAAGCTAAATCCATCGCGACGTCTCTC 119
Query 145 GGTGGTGATCGTGTATTGATATTCCCGTGTTCTCCTCGCTCTTCCTTCGTTTTTACATCC 204
| ||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct 120 TGCGGTGACCGTGTATTGATATTCCCGAGTTCTCCTCGCTCTTCTTTCGTTTCTACATCC 179
Query 205 CGGCTCTCTAGCCTGCCTCTAAAGCGTGCGTCTATCGGTGGTGCTGTCTCTTGTTCCGGC 264
||||||||| ||||||| || |||||||||||||||||||||| || |||||||||||||
Sbjct 180 CGGCTCTCTCGCCTGCCCCTGAAGCGTGCGTCTATCGGTGGTGGTGCCTCTTGTTCCGGC 239
Query 265 GTCAATGGCTTGACTCGGTGGAATTCCATTGTTTCGACTCGCCGACTCGTTCCTGTTCGT 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTCAATGGCTTGACTCGGTGGAATTCCATTGTTTCGACTCGCCGACTCGTTCCTGTTCGT 299
Query 325 TCAATTAACTCGGAATCGGACTCGGACTCCGACTTCCCTCACGAGAATCAGCAGGGAAAT 384
| ||| |||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 300 GCTATTGACTCGGAATC--A----GACTCGGACTTCCCTCACGAGAATCAGCAGGGAAAT 353
Query 385 CCAGGTTTGGGGAAATTTAAGGAATACCAAGAATGGGACTCATGGACGGCCAAGTTCTCC 444
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 354 CCAGGTTTGGGGAAATTTAAGGAATACCAAGAATGGGATTCATGGACGGCCAAGTTCTCC 413
Query 445 GGTGGAGCAAACATTCCGTTTCTCATGCTCCAATTGCCTCAGATCATCCTCAATACCCAG 504
||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||| |||||
Sbjct 414 GGTGGAGCAAACATTCCATTTCTCATGCTGCAATTGCCACAGATTATCCTCAATTCCCAG 473
Query 505 AATCTTTTGGCGGGAAACAATACCGCTCTTTCGGCTGTCCCATGGCTGGGAATGTTGACT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AATCTTTTGGCGGGAAACAATACCGCTCTTTCGGCTGTCCCATGGCTGGGAATGTTGACT 533
Query 565 GGTTTGTTAGGAAACCTTTCGTTGCTTTCTTATTTTGCTAAGAAGAGAGAAAAAGAAGCA 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GGTTTGTTAGGAAACCTTTCGTTGCTTTCTTATTTTGCTAAGAAGAGAGAAAAAGAAGCA 593
Query 625 GCTGTGGTGCAAACACTGGGAGTGGTCTCTACTCACATTGTGCTTGCACAGCTCACAATG 684
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GCTGTTGTGCAAACACTAGGAGTGGTCTCTACTCACATTGTGCTTGCACAGCTCACAATT 653
Query 685 GCTGAAGCAATGCCTATTCAGTATTTTGTTGCTACTTCAGCTGTTGTCACCATCGGTCTC 744
||||||||||||||||| |||||||||||||| |||||||| |||||||| || ||||||
Sbjct 654 GCTGAAGCAATGCCTATGCAGTATTTTGTTGCCACTTCAGCCGTTGTCACGATTGGTCTC 713
Query 745 AT-TGTGAACTGTTTGTACTATTTCGGTAAGCTTAGCAAAACTGTGTGGCAACTGTGGGA 803
|| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 714 ATAT-TGAACTGTTTGTACTATTTCGGTAAGCTTAGCAAAACTGCGTGGCAACTGTGGGA 772
Query 804 AGACGTTATCACTATTGGTGGACTCTCCGTTCTTCCTCAAATCATGTGGTCAACATTTGT 863
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 773 AGACTTTATCACTATTGGTGGACTCTCCGTTCTTCCTCAAATCATGTGGTCAACTTTTGT 832
Query 864 CCCTCTTGTACCAAACAGTATCTTGCCTGGGACAACTGCTTTTGGTATTGCTGTGGCAGC 923
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 833 CCCTCTTGTACCAAACAGTATCTTGCCTGGGACAACTGCTTTTGGTATTGCTGTAGCAGC 892
Query 924 TATAATCATGGCTCGAACTGGGAAACTTTCAGAGAAAGGTGTTAGGTTTGTAGGGTCTTT 983
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 893 TATAATTATGGCTCGAACTGGGAAACTTTCAGAGAAAGGTGTTAGGTTTGTCGGGTCTTT 952
Query 984 ATCTGGATGGACAGCAACTCTTATGTTCATGTGGATGCCAGTTTCCCAAATGTGGACAAA 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 ATCTGGATGGACAGCAACTCTTATGTTCATGTGGATGCCAGTTTCCCAAATGTGGACAAA 1012
Query 1044 TTTTCTAAACCCGGACAACATAAAAGGCTTATCGTCAATCACAATGTTGCTCTCGATGAT 1103
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TTTCCTAAACCCGGACAACATAAAAGGCTTATCGTCAATCACAATGTTGCTCTCGATGAT 1072
Query 1104 GGGAAACGGGCTTATGATCCCTCGAGCACTATTTATCCGTGATTTGATGTGGCTCACTGG 1163
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GGGAAACGGGCTTATGATCCCACGAGCACTATTTATCCGTGATTTGATGTGGCTCACTGG 1132
Query 1164 TTCGCTATGGGCAACTCTCTTTTATGGATATGGAAATATTCTTTGCTTATACCTGGTAAA 1223
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1133 TTCGCTATGGGCAACTCTCTTTTATGGATATGGAAATATCCTTTGCTTATACATGGTAAA 1192
Query 1224 TTGCACCAGCCAGTCATTCTTCGTGGCAGCTACAATTGGTTTGATCTCATGGATAGGACT 1283
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1193 TTGCACCAGCAAGTCATTCTTCGTGGCAGCTACAATTGGTTTGATCTCATGGATAGGATT 1252
Query 1284 GGCTTTGTGGAGAGATGCAGTGGCTTATGGTCACAACTCGCCGTTTAGATCTTTGAAAGA 1343
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1253 GGCTTTGTGGAGAGACGCAGTGGCTTATGGTCACAACTCCCCGTTTAGATCTTTGAAAGA 1312
Query 1344 ACTTGTTTTTGGACCGTAATGAATGA---A-TGTACACGCCA-TA----A-A--CGCCCT 1391
||| |||||||||| |||||||||| | ||||||||||| || | | |||| |
Sbjct 1313 ACTCATTTTTGGACCATAATGAATGAGTGAGTGTACACGCCAATACGCCATAAACGCCGT 1372
Query 1392 TTGTTCAAGCAA-GTCCATAGAGATT-ACATGTATTTTCATTCTTTTTT 1438
|||||||||||| |||| ||| | || ||||||||||| ||||||||||
Sbjct 1373 TTGTTCAAGCAAAGTCCTTAGGGGTTTACATGTATTTTTATTCTTTTTT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5