BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17540.1 Length=1484 Score E Sequences producing significant alignments: (Bits) Value Ahg488622 jgi|Araly1|488622|fgenesh2_kg.6__1756__AT5G17540.1 713 0.0 > Ahg488622 jgi|Araly1|488622|fgenesh2_kg.6__1756__AT5G17540.1 Length=1355 Score = 713 bits (386), Expect = 0.0 Identities = 576/663 (87%), Gaps = 32/663 (5%) Strand=Plus/Plus Query 25 ATGTCCGGGTCACTCACGTTTAAGATTTACCGGCAGAAGCCGGAGTTAGTTTCTCCGGCG 84 |||||||||| |||||||||| | || ||||| |||||||||||||||||||||||| Sbjct 1 ATGTCCGGGTTGCTCACGTTTACGGTTCACCGGAAGAAGCCGGAGTTAGTTTCTCCGGTA 60 Query 85 AAGCCAACGCCAAGAGAGCTCAAACCCCTCTCAGATATTGACGACCAAGAAGGACTAAGA 144 || ||||| || ||||||||||||| ||||||||| || |||||||||||||| |||||| Sbjct 61 AAACCAACACCGAGAGAGCTCAAACTCCTCTCAGACATCGACGACCAAGAAGGCCTAAGA 120 Query 145 TTTCACATTCCCACTATCTTTTTCTATAGACACAACCCTACTACTAACTCTGATCCTGTC 204 || ||||||||||||||||| |||||||| || | || || | || | | | Sbjct 121 TTCCACATTCCCACTATCTTCTTCTATAG--AC-A---TA--AC---C-CT-A--C--T- 162 Query 205 GCAGTCATTCGGAGAGCTCTCGCAGAGACGCTGGTTTACTACTATCCGTTCGCCGGTAGG 264 || | |||| || || | |||||||||||||||||| ||||| || |||||| Sbjct 163 GC--TTATTC--CGA----TC-C---GACGCTGGTTTACTACTACCCGTTTGCAGGTAGG 210 Query 265 CTTCGGGAAGGACCGAACCGGAAACTGGCTGTGGATTGTACCGGTGAAGGCGTTTTGTTT 324 || |||||||||| |||||||||||| || ||||| || |||||||||||||||||||| Sbjct 211 CTCCGGGAAGGACAGAACCGGAAACTTGCCGTGGACTGCACCGGTGAAGGCGTTTTGTTC 270 Query 325 ATTGAGGCTGATGCTGACGTGACACTTGTTGAGTTTGAAGAGAAGGATGCTCTTAAGCCT 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 ATTGAGGCTGATGCTGACGTGACACTTGTTGAGTTTGAAGAGAAGGATGCTCTTAAGCCT 330 Query 385 CCTTTCCCTTGCTTTGAAGAGCTTCTGTTTAACGTT-GAAGGTTCTTGTGAAATGCTCAA 443 || ||||||||||||||||||||||||||| || || ||||||||| ||||||||||||| Sbjct 331 CCATTCCCTTGCTTTGAAGAGCTTCTGTTTGAC-TTAGAAGGTTCTAGTGAAATGCTCAA 389 Query 444 CACTCCTTTGATGCTCATGCAGGTCACGCGCTTGAAATGCGGCGGTTTTATCTTCGCCGT 503 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 390 CACTCCTTTGATGCTCATGCAGGTCACGCGCTTAAAATGCGGCGGTTTTATCTTCGCCGT 449 Query 504 CCGTATCAACCACGCAATGTCCGATGCCGGCGGTCTCACGCTGTTCCTCAAAACGATGTG 563 |||||||||||||| |||||| || || | |||||||| ||| || |||||||||||||| Sbjct 450 CCGTATCAACCACGTAATGTCGGACGCTGCCGGTCTCAAGCTCTTTCTCAAAACGATGTG 509 Query 564 CGAGTTCGTGCGTGGTTATCATGCACCTACGGTTGCTCCGGTGTGGGAACGTCACCTGCT 623 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 510 CGAGTTCGTGCGTGGTTATCATGCGCCTACGGTTGCTCCGGTGTGGGGACGTCACCTGCT 569 Query 624 GAGCGCCAGAGTCCTGCTGCGTGTGACACACGCACACCGAGAGTACGACGAAATGCCGGC 683 || |||| | |||| | |||||||||||||| ||||| || ||||| |||||||| || Sbjct 570 GAACGCCTGTGTCCCGGTGCGTGTGACACACATGCACCGGGAATACGATGAAATGCCAGC 629 Query 684 AAT 686 ||| Sbjct 630 AAT 632 Score = 669 bits (362), Expect = 0.0 Identities = 431/464 (93%), Gaps = 5/464 (1%) Strand=Plus/Plus Query 1023 ACTAATAAAAGAGGCGAAATCGAGCGTGACGGAGGAGTACATGCGATCACTTGCGGATCT 1082 ||||| ||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 894 ACTAAGAAACCAGGCGAAATTGAGCGTGACAGAGGAGTACATGCGATCGCTTGCGGATCT 953 Query 1083 GATGGTGATAAAGGGAAGACCAAGCTTCTCGTCGGACGGAGCTTACTTGGTTTCGGATGT 1142 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 954 TATGGTGATAAAGGGAAGACCAAGCTTCTCGTCGGACGGAGCTTACTTGGTATCGGATGT 1013 Query 1143 AAGAATTTTCGCAGATATTGATTTCGGAATTTGGGGGAAACCAGTTTACGGAGGAATTGG 1202 |||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||| Sbjct 1014 GAGAATTTTCGCAGACATCGATTTCAAAATTTGGGGGAAACCGGTTTACGGAGGAATTGG 1073 Query 1203 TACAGCCGGAGTT-GAAGACCTTCCGGGGGCTAGCTTCTACGTTTC-ATTTGAGAAGAGA 1260 ||||||||||||| | || ||||||||||||||||||||||||| | |||||||||| Sbjct 1074 TACAGCCGGAGTTCG-GGATTTTCCGGGGGCTAGCTTCTACGTTTCGA-CTGAGAAGAGA 1131 Query 1261 AATGGTGAGATAGGGATCGTTGTACCGGTTTGTTTGCCAGAGAAGGCGATGCAGAGGTTT 1320 |||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |||| Sbjct 1132 AATGGTCAGATAGGGATCATTGTACCGGTTTGTTTGCCAGAGAAGGCGATGCAAATGTTT 1191 Query 1321 GTGGAAGAGCTTGAAGGCGTGTTTAATGGTCAAGTTGTATTCAATAGAGGAAGC-AAAAG 1379 |||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1192 GTGGAAGAGCTTGAGGGTGTGTTTAATGGTCAATTTGTATTCAATAGAGGAAGCAAAAAG 1251 Query 1380 CTCTAATAAATTGATCATGTCTTCTCTGTAAAAACTACCTTATTGATAACTTCAATGCAA 1439 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1252 CTCTAACAAACTGATCATGTCTTCTCTGTAAAAACTACCTTATTGATAACTTCAATGCAA 1311 Query 1440 TGATTGTCTTAGTAAAGAAACTCGAACTCTCTGTATTTGTTTGC 1483 |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1312 TGATTGTCTTAGTAAAGAAACTCGAACTCTCTGTATCTGTTTGC 1355 Score = 281 bits (152), Expect = 8e-75 Identities = 203/228 (89%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 724 GGCCGGTCACTCTTCTTCGGTCCCTG-CGAGATGTCCGCAATACGCAGGCTCCTCCCACC 782 ||||||||| ||||||| || || || |||||||| ||||||||| |||||||||||||| Sbjct 634 GGCCGGTCATTCTTCTTTGG-CCATGACGAGATGTTCGCAATACGGAGGCTCCTCCCACC 692 Query 783 AAATCTTGTCAACAGCAGCACCAATATGGAAATGCTAACGTCTTTCTTATGGCGTTATCG 842 ||||||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||| Sbjct 693 GAATCTTGTCAACAGCAGCACCAATATGGAAACGCTGACGTCGTTCTTATGGGGTTATCG 752 Query 843 CACCATCGCTCTACGACCAGACCAGGACAAGGAGATGCGGCTCATATTAATTGTCAACGC 902 ||| ||||||||| ||| |||| ||||||||||||||| |||||||| || ||||| || Sbjct 753 CACTGTCGCTCTACAACCCGACCCGGACAAGGAGATGCGACTCATATTCATCGTCAATGC 812 Query 903 ACGTTCTAAGCTTAAAAATCCACCACTACCTCGAGGATACTACGGAAA 950 ||||||||||||||||| ||||||||||||| |||||| |||||||| Sbjct 813 GCGTTCTAAGCTTAAAAACCCACCACTACCTCCAGGATATTACGGAAA 860 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55535577210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5