BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17540.1
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488622 jgi|Araly1|488622|fgenesh2_kg.6__1756__AT5G17540.1 713 0.0
> Ahg488622 jgi|Araly1|488622|fgenesh2_kg.6__1756__AT5G17540.1
Length=1355
Score = 713 bits (386), Expect = 0.0
Identities = 576/663 (87%), Gaps = 32/663 (5%)
Strand=Plus/Plus
Query 25 ATGTCCGGGTCACTCACGTTTAAGATTTACCGGCAGAAGCCGGAGTTAGTTTCTCCGGCG 84
|||||||||| |||||||||| | || ||||| ||||||||||||||||||||||||
Sbjct 1 ATGTCCGGGTTGCTCACGTTTACGGTTCACCGGAAGAAGCCGGAGTTAGTTTCTCCGGTA 60
Query 85 AAGCCAACGCCAAGAGAGCTCAAACCCCTCTCAGATATTGACGACCAAGAAGGACTAAGA 144
|| ||||| || ||||||||||||| ||||||||| || |||||||||||||| ||||||
Sbjct 61 AAACCAACACCGAGAGAGCTCAAACTCCTCTCAGACATCGACGACCAAGAAGGCCTAAGA 120
Query 145 TTTCACATTCCCACTATCTTTTTCTATAGACACAACCCTACTACTAACTCTGATCCTGTC 204
|| ||||||||||||||||| |||||||| || | || || | || | | |
Sbjct 121 TTCCACATTCCCACTATCTTCTTCTATAG--AC-A---TA--AC---C-CT-A--C--T- 162
Query 205 GCAGTCATTCGGAGAGCTCTCGCAGAGACGCTGGTTTACTACTATCCGTTCGCCGGTAGG 264
|| | |||| || || | |||||||||||||||||| ||||| || ||||||
Sbjct 163 GC--TTATTC--CGA----TC-C---GACGCTGGTTTACTACTACCCGTTTGCAGGTAGG 210
Query 265 CTTCGGGAAGGACCGAACCGGAAACTGGCTGTGGATTGTACCGGTGAAGGCGTTTTGTTT 324
|| |||||||||| |||||||||||| || ||||| || ||||||||||||||||||||
Sbjct 211 CTCCGGGAAGGACAGAACCGGAAACTTGCCGTGGACTGCACCGGTGAAGGCGTTTTGTTC 270
Query 325 ATTGAGGCTGATGCTGACGTGACACTTGTTGAGTTTGAAGAGAAGGATGCTCTTAAGCCT 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 ATTGAGGCTGATGCTGACGTGACACTTGTTGAGTTTGAAGAGAAGGATGCTCTTAAGCCT 330
Query 385 CCTTTCCCTTGCTTTGAAGAGCTTCTGTTTAACGTT-GAAGGTTCTTGTGAAATGCTCAA 443
|| ||||||||||||||||||||||||||| || || ||||||||| |||||||||||||
Sbjct 331 CCATTCCCTTGCTTTGAAGAGCTTCTGTTTGAC-TTAGAAGGTTCTAGTGAAATGCTCAA 389
Query 444 CACTCCTTTGATGCTCATGCAGGTCACGCGCTTGAAATGCGGCGGTTTTATCTTCGCCGT 503
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 390 CACTCCTTTGATGCTCATGCAGGTCACGCGCTTAAAATGCGGCGGTTTTATCTTCGCCGT 449
Query 504 CCGTATCAACCACGCAATGTCCGATGCCGGCGGTCTCACGCTGTTCCTCAAAACGATGTG 563
|||||||||||||| |||||| || || | |||||||| ||| || ||||||||||||||
Sbjct 450 CCGTATCAACCACGTAATGTCGGACGCTGCCGGTCTCAAGCTCTTTCTCAAAACGATGTG 509
Query 564 CGAGTTCGTGCGTGGTTATCATGCACCTACGGTTGCTCCGGTGTGGGAACGTCACCTGCT 623
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 510 CGAGTTCGTGCGTGGTTATCATGCGCCTACGGTTGCTCCGGTGTGGGGACGTCACCTGCT 569
Query 624 GAGCGCCAGAGTCCTGCTGCGTGTGACACACGCACACCGAGAGTACGACGAAATGCCGGC 683
|| |||| | |||| | |||||||||||||| ||||| || ||||| |||||||| ||
Sbjct 570 GAACGCCTGTGTCCCGGTGCGTGTGACACACATGCACCGGGAATACGATGAAATGCCAGC 629
Query 684 AAT 686
|||
Sbjct 630 AAT 632
Score = 669 bits (362), Expect = 0.0
Identities = 431/464 (93%), Gaps = 5/464 (1%)
Strand=Plus/Plus
Query 1023 ACTAATAAAAGAGGCGAAATCGAGCGTGACGGAGGAGTACATGCGATCACTTGCGGATCT 1082
||||| ||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 894 ACTAAGAAACCAGGCGAAATTGAGCGTGACAGAGGAGTACATGCGATCGCTTGCGGATCT 953
Query 1083 GATGGTGATAAAGGGAAGACCAAGCTTCTCGTCGGACGGAGCTTACTTGGTTTCGGATGT 1142
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 954 TATGGTGATAAAGGGAAGACCAAGCTTCTCGTCGGACGGAGCTTACTTGGTATCGGATGT 1013
Query 1143 AAGAATTTTCGCAGATATTGATTTCGGAATTTGGGGGAAACCAGTTTACGGAGGAATTGG 1202
|||||||||||||| || |||||| ||||||||||||||| |||||||||||||||||
Sbjct 1014 GAGAATTTTCGCAGACATCGATTTCAAAATTTGGGGGAAACCGGTTTACGGAGGAATTGG 1073
Query 1203 TACAGCCGGAGTT-GAAGACCTTCCGGGGGCTAGCTTCTACGTTTC-ATTTGAGAAGAGA 1260
||||||||||||| | || ||||||||||||||||||||||||| | ||||||||||
Sbjct 1074 TACAGCCGGAGTTCG-GGATTTTCCGGGGGCTAGCTTCTACGTTTCGA-CTGAGAAGAGA 1131
Query 1261 AATGGTGAGATAGGGATCGTTGTACCGGTTTGTTTGCCAGAGAAGGCGATGCAGAGGTTT 1320
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 1132 AATGGTCAGATAGGGATCATTGTACCGGTTTGTTTGCCAGAGAAGGCGATGCAAATGTTT 1191
Query 1321 GTGGAAGAGCTTGAAGGCGTGTTTAATGGTCAAGTTGTATTCAATAGAGGAAGC-AAAAG 1379
|||||||||||||| || ||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1192 GTGGAAGAGCTTGAGGGTGTGTTTAATGGTCAATTTGTATTCAATAGAGGAAGCAAAAAG 1251
Query 1380 CTCTAATAAATTGATCATGTCTTCTCTGTAAAAACTACCTTATTGATAACTTCAATGCAA 1439
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CTCTAACAAACTGATCATGTCTTCTCTGTAAAAACTACCTTATTGATAACTTCAATGCAA 1311
Query 1440 TGATTGTCTTAGTAAAGAAACTCGAACTCTCTGTATTTGTTTGC 1483
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1312 TGATTGTCTTAGTAAAGAAACTCGAACTCTCTGTATCTGTTTGC 1355
Score = 281 bits (152), Expect = 8e-75
Identities = 203/228 (89%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 724 GGCCGGTCACTCTTCTTCGGTCCCTG-CGAGATGTCCGCAATACGCAGGCTCCTCCCACC 782
||||||||| ||||||| || || || |||||||| ||||||||| ||||||||||||||
Sbjct 634 GGCCGGTCATTCTTCTTTGG-CCATGACGAGATGTTCGCAATACGGAGGCTCCTCCCACC 692
Query 783 AAATCTTGTCAACAGCAGCACCAATATGGAAATGCTAACGTCTTTCTTATGGCGTTATCG 842
||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||
Sbjct 693 GAATCTTGTCAACAGCAGCACCAATATGGAAACGCTGACGTCGTTCTTATGGGGTTATCG 752
Query 843 CACCATCGCTCTACGACCAGACCAGGACAAGGAGATGCGGCTCATATTAATTGTCAACGC 902
||| ||||||||| ||| |||| ||||||||||||||| |||||||| || ||||| ||
Sbjct 753 CACTGTCGCTCTACAACCCGACCCGGACAAGGAGATGCGACTCATATTCATCGTCAATGC 812
Query 903 ACGTTCTAAGCTTAAAAATCCACCACTACCTCGAGGATACTACGGAAA 950
||||||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 813 GCGTTCTAAGCTTAAAAACCCACCACTACCTCCAGGATATTACGGAAA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55535577210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5