BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17550.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941266 jgi|Araly1|941266|scaffold_601810.1 1251 0.0
Ahg477595 jgi|Araly1|477595|fgenesh2_kg.3__296__AT3G03490.1 660 0.0
> Ahg941266 jgi|Araly1|941266|scaffold_601810.1
Length=784
Score = 1251 bits (677), Expect = 0.0
Identities = 734/762 (96%), Gaps = 1/762 (0%)
Strand=Plus/Plus
Query 58 AGAGA-GACTCGAGAATATGGCCAACGATACTCACACCGATGACTTAGACGAGCTTCTCG 116
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 5 AGAGACGACTCGAGAATATGGCCAACGACACTCACACCGATGACTTAGACGAGCTTCTCG 64
Query 117 ATAGTGCCTTGGATGATTTCAAGGATCTTAATCTTACTCAAAGAAATGGAGGGGTTAAGA 176
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 65 ATAGTGCCTTGGATGATTTCAAGGATCTCAATCTTACTCAAAGAAATGGAGGGGTTAAGA 124
Query 177 AAGAAGAGGGTGATAAAAAAGAGACAGAGTCATTGCCAAGTGGGGTTCAAGGTCTTGGAA 236
|||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 125 AAGAAGAGAGTGGTAAAAAGGAGACAGAGTCATTGCCGAGTGGGGTTCAAGGTCTTGGAA 184
Query 237 TGGGGTTACCAGATATGAGGAGTAAGAAGAAAGGAAAGAAAAAGATTGCTAAAGAGGACC 296
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 185 TGGGGTTACCAGATATGAGGAGTAAGAAGAAAGGAAAGCAAAAGATTGCTAAAGAGGACC 244
Query 297 ATGTTACTGAGGCACTTGATAAACTCAGGGAACAAACTAGAGAAACTGTGAAGGGACTTG 356
||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 245 ATGTTGCTGAGGCTCTTGATAAACTCAGGGAACAAACCAGAGAAACTGTGAAGGGACTTG 304
Query 357 AGTCCTTGTCATCGAAGCAGCAACCTACAGGTTCTGATGATGCTATGGTTGAAGATTGGA 416
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 305 AGTCCTTGTCATCGAAGCAGCAGCCTACAGGTTCTGATGATGCTATGGTCGAAGATTGGA 364
Query 417 TCAAGCAATTCGAGAATCTTACTGGGTCTAACGACTTGGAGTCGATAGTGGACACGATGA 476
|||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 365 TCAAGCAATTCGAGGATCTTGCTGGGTCTAACGACTTGGAGTCAATAGTGGACACGATGA 424
Query 477 TGCAACAGCTGTTATCGAAGGATATTCTTCACGAACCAATGAAAGAGATTGGTGCAAGAT 536
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TGCAACAGCTATTATCGAAGGATATTCTTCACGAACCAATGAAAGAGATTGGTGCAAGAT 484
Query 537 ACCCAAAATGGCTAGAAGAGCATGAATCCAGTCTAAACAAGGAAGAATTCGATCGTTATT 596
|||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 485 ACCCGAAATGGCTAGAAGAGCATGAATCCAGTCTAAACAAGGAGGAATTCGAACGTTACT 544
Query 597 CACGCCAGTATGAACTTATCAAAGAACTCAACTTGGTGTACGAGAACGAACCAAACAATT 656
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 545 CGCGCCAGTATGAACTAATCAAAGAACTCAACTTGGTGTATGAGAACGAACCAAACAATT 604
Query 657 CGACCAAGATAATGGAGATAATGCAGAAGATGCAAGAGTGTGGACAACCACCGAGTGATA 716
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 605 CGACCAAGATAATGGAGATTATGCAGAAGATGCAAGAGTGTGGACAACCACCGAGTGATA 664
Query 717 TAGTGCAAGAGATGGATCCTGGCTTTGATTTCGCTAGTCTGGGCCAAATGTCTCCGGACA 776
|||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 665 TAGTGCAAGAGATGGATCCTGGGTTTGATTTCGCGAGTTTGGGCCAAATGTCTCCGGACA 724
Query 777 TGCTCGAGTCTTCACCAAATTGTTGTGTAATGTGAGGGAAGA 818
||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TGCTCGAGTCTTCACCAAATTGTTGTGTAATGTGAGGGAAGA 766
> Ahg477595 jgi|Araly1|477595|fgenesh2_kg.3__296__AT3G03490.1
Length=926
Score = 660 bits (357), Expect = 0.0
Identities = 643/779 (83%), Gaps = 27/779 (3%)
Strand=Plus/Plus
Query 53 GAGGAAGAGAGAC-TC-GA-GAATATGGCCAACGATACTCACACCGATGACTTAGACGAG 109
|||||||||| || | | ||| ||||||||| | ||||||||||||||||||||||
Sbjct 74 GAGGAAGAGAAACGCCTAAGGAAAATGGCCAAC---AGTCACACCGATGACTTAGACGAG 130
Query 110 CTTCTCGATAGTGCCTTGGATGATTTCAAGGATCTTAATCTTACTCAAAGAAAT-GGAGG 168
|||||||||||||| |||||||||||||| ||||| |||||| ||||||||||| |||
Sbjct 131 CTTCTCGATAGTGCATTGGATGATTTCAAAGATCTCAATCTTTCTCAAAGAAATCAAAGG 190
Query 169 G--G-TTAAGA-AAGAAGAGGGTG-ATAAAAAAGAGACAGAGTCATTGCCAAGTGGGGTT 223
| | |||| || ||| | | | ||| ||||||| | | ||| || ||||| |||
Sbjct 191 GAAGCGCAAGAGGAGGAGAAGAAGAAGAAAGAAGAGACGGTTTTATTACCGAGTGGAGTT 250
Query 224 CAAGGTCTTGGAATGGGGTTACCAGATATGAGGAGTAAGAAGAAAGGAAAGAAAAAGATT 283
||||||||||||||||| |||||||||||||| || ||||| ||||||||| ||||| ||
Sbjct 251 CAAGGTCTTGGAATGGGATTACCAGATATGAGAAGCAAGAAAAAAGGAAAGCAAAAGGTT 310
Query 284 GCTAAAGAGGACCATGTTACTGAGGCACTTGATAAACTCAGGGAACAAACTAGAGAAACT 343
|||||||||| |||||| |||| || |||||||| || |||||||||||||| ||||||
Sbjct 311 TCTAAAGAGGATCATGTTGCTGAAGCTCTTGATAAGCTTAGGGAACAAACTAGGGAAACT 370
Query 344 GTGAAGGGACTT-GAGTCC-TTGTCATCGAAGCAGCAACCTACAGGTTCTGATGATGCT- 400
|| || ||| || || ||| || || || ||||||| | ||| ||||||||||| |
Sbjct 371 GTCAAAGGA-TTGGAATCCATT-TCTTCTAAGCAGC-TGC--CAGCTTCTGATGATGATG 425
Query 401 --ATGGTTGAAGATTGGATCAAGCAATTCGAGAATCTTACTGGGTCTAACGACTTGGAGT 458
|||||||| |||| |||||||||| ||| |||||||||| || || |||||||| |
Sbjct 426 GAATGGTTGAGGATTTTCTCAAGCAATTTGAGGATCTTACTGGATCCAAGGACTTGGAAT 485
Query 459 CGATAGTGGACACGATGATGCAACAGCTGTTATCGAAGGATATTCTTCACGAACCAATGA 518
| ||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 486 CAATAGTCGAAACGATGATGCAACAGCTATTGTCGAAGGATATTCTTCACGAACCAATGA 545
Query 519 AAGAGATTGGTGCAAGATACCCAAAATGGCTAGAAGAGCATGAATCCAGTCTAAACAAGG 578
| ||| ||||||||||||| || ||||||||| ||||| ||||| ||||||||| ||| |
Sbjct 546 AGGAGCTTGGTGCAAGATATCCGAAATGGCTAAAAGAGAATGAAGCCAGTCTAACCAAAG 605
Query 579 AAGAATTCGATCGTTATTCACGCCAGTATGAACTTATCA-AAGAACTCAACTT-GGTGTA 636
|||| | | | |||||||||| ||||| |||| || | |||||||||| | ||| ||
Sbjct 606 AAGACTACAAACGTTATTCACAACAGTACAAACTAAT-AGAAGAACTCAA-TGCGGTATA 663
Query 637 CGAGAACGAACCAAACAATTCGACCAAGATAATGGAGATAATGCAGAAGATGCAAGAGTG 696
|||||| ||||| |||||||| | |||||||||||||| ||||||||||||||||| ||
Sbjct 664 CGAGAATGAACCGAACAATTCTTCTAAGATAATGGAGATCATGCAGAAGATGCAAGAATG 723
Query 697 TGGACAACCACCGAGTGATATAGTGCAAGAGATGGATCCTGGCTTTGATTTCGCTAGTCT 756
|||||||| |||||||||||||| ||||||| ||||| || |||||||| || |||||
Sbjct 724 CGGACAACCCCCGAGTGATATAGTTAAAGAGATCGATCCCGGGTTTGATTTTGCAAGTCT 783
Query 757 GGGCCAAATGTCTCCGGACATGCTCGAGTCTTCACCAAATTGTTGTGTAATGTGA-GGG 814
|||||||| |||||||| ||||| ||||| || |||||||| ||| |||||||| |||
Sbjct 784 AGGCCAAATATCTCCGGAGATGCTAGAGTCCTCGCCAAATTGCTGTATAATGTGATGGG 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5