BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17560.1
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941267 jgi|Araly1|941267|scaffold_601811.1 920 0.0
> Ahg941267 jgi|Araly1|941267|scaffold_601811.1
Length=565
Score = 920 bits (498), Expect = 0.0
Identities = 549/572 (96%), Gaps = 9/572 (2%)
Strand=Plus/Plus
Query 2 CTCGCAAGTCTCTCAAGCAATGGCGCAGACATTAATGGCGACAACTCGTCCGTACGTTCT 61
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2 CTCTCAAGTCTCTCAAGCAATGGCGCAGACCTTAATGGCGACAACTCGTCCGTACGTTCT 61
Query 62 TCTCTCTTCCACAAGAGCGAGTCTTTATCGCCTTTTTCAATCTTCAAAGAGACCCTTCGC 121
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 62 TCTCTCTTCCACAAGAGCGAGTCTTTATCTCCTTTTTCAATCTTCAAAGAGACCCTTCGC 121
Query 122 TTCATTCTCAGCTCCTCTCGTGAGATTCACTAACTCGAGATGTGTAAGCGCCGTTTTGTC 181
||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 122 TTCATTCTCAGCTCCTCTCGTGAAAATCACCAACTCGAGATGTGTAAGCGCCGTTTTGTC 181
Query 182 TCGTAAAGAGACTGCGCCGTCGTCGATTTACGGCAATAGAGTTTCTAGGGTTTCTGGGTT 241
|||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 182 TCGTAAAGAGACTGCGCCGTCGTCGATTTACGGC---A-A-----TAGGGTTTCTGGGTT 232
Query 242 TGGTGCTTTGGACATTCGCAGCCTTAATTTCAGTACTAAATCCTCTCAAATCAATGATGC 301
||||| ||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 233 TGGTGTTTTGGACATTCGCAGCCGTAATTTCAGTACCAGATCCTCTCAAATCAATGATGC 292
Query 302 TGGTTCTATTGATCAAACCCTTATGCAATCCATGGAGCTAAAGATCAAAGAACAATTGAA 361
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 293 TGGTTCTATTGATCAAACCCTTATGCAATCCATGGAGCAAAAGATCAAAGAACAATTGAA 352
Query 362 TGCAGAGTCGGTTACTGTAACGGATATGTCTGGAGATGGACGTCATGTCTGCATCAATGT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TGCAGAGTCGGTTACTGTAACGGATATGTCTGGAGATGGACGTCATGTCTGCATCAATGT 412
Query 422 GGTATCATCGGCTTTTGAGGGACAATCTGCAGTGAACAGACAAAGGATGGTCTACAAAGC 481
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 413 TGTATCATCGGCTTTTGAGGGACAATCTGCAGTGAACAGACAACGGATGGTCTACAAAGC 472
Query 482 CATTTGGGAAGAGCTTCAGAACGTTGTTCATGCCGTTGATCAAATGACAACAAAGACTCC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CATTTGGGAAGAGCTTCAGAACGTTGTTCATGCCGTTGATCAAATGACAACAAAGACTCC 532
Query 542 TTCTGAAGTTTGAAGCGTTAAATTTTCCGAAC 573
|||||||||||||||||||||||||||| |||
Sbjct 533 TTCTGAAGTTTGAAGCGTTAAATTTTCCAAAC 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29773998177
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5