BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17570.1
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326186 jgi|Araly1|326186|fgenesh1_pm.C_scaffold_6001406 1535 0.0
Ahg317188 jgi|Araly1|317188|fgenesh1_pm.C_scaffold_3000204 370 1e-101
> Ahg326186 jgi|Araly1|326186|fgenesh1_pm.C_scaffold_6001406
Length=978
Score = 1535 bits (831), Expect = 0.0
Identities = 929/978 (95%), Gaps = 0/978 (0%)
Strand=Plus/Plus
Query 23 ATGAAACTGTTCGACGCGCACTGTCACCTTCAAGACCCGAGGATTATCACCAAAGCTCCT 82
|||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGAAACTATTCGACGTGCACTGTCACCTTCAAGACCCGAGGATTATCATCAAAGCTCCT 60
Query 83 CAGATAATCTCCTCCGCCGTTGCTTCCGGCGTCTCTGCTTTCGCCGTCAATGGAGTCTCC 142
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CAGCTAATCTCCTCCGCCGTTGCTTCCGGCGTCTCTGCCTTCGCCGTCAATGGAGTCTCC 120
Query 143 GAGAAAGATTGGAGTTTGGTCAAAGAGATGGGAGCTAAATACCCTTCTGTTGTTCCTTGC 202
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGAAAGATTGGAATTTGGTCAAAGAGATGGGAGCTAAATACCCTTCTGTTGTTCCTTGC 180
Query 203 TTTGGGATCCATCCATGGTATGTAGCAGAGAGGAGTCCTCAATGGTTTGAGACATTAAAG 262
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 181 TTTGGGATCCATCCATGGTATGTAGTAGAGAGGAGTCCTCAATGGTTTGAGACATTGAAG 240
Query 263 AGTTTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTGGACAAAGGGTCT 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTTTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTGGACAAAGGGTCT 300
Query 323 AAGGGAAGGGAGATTGATTTCTCAGAACAGGTTACCGTCTTTCGTCAACAGCTTGAACTT 382
|||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||
Sbjct 301 AAGGGAAGGGAGATTGATTTCTCAGACCAGGTTACTGTGTTTCGTCAACAGCTCGAACTT 360
Query 383 GCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTC 442
|||||||||||||| | |||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 361 GCAAAGGAATTGAATAGACCTGCTTCAGTTCATTGTGTCCGTGCATTCGGGGATCTACTC 420
Query 443 GAGATATTAAAATCTGTAGGGCCTTTTCCTTCTGGGGTCATGCTTCACTCGTATTTGGGT 502
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | |||
Sbjct 421 GAGATATTAAAATCTGTGGGGCCCTTTCCTTCTGGTGTCATGCTTCACTCGTATCTAGGT 480
Query 503 TCTGCTGAGATGGTTCCTGAATTTGCTAAGCTCGGTGCATATTTCTCCTTCTCCGGTTTC 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTGCTGAGATGGTTCCTGAATTTGCTAAGCTCGGTGCATATTTCTCCTTCTCCGGTTTC 540
Query 563 CTTATGTCCATGAGTGAGAAAAAAGCCAAGAAGATGTTGAAAGCAGTTCCATCTGATAGG 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTATGTCCATGAGTGAGAAAAAAGCCAAGAAGATGTTGAAAGCAGTTCCATCTGATAGG 600
Query 623 ATCTTATTGGAGACGGATTCACCAGATGCACTACCAAAGGCAGAGTCAGGTTGTCTCTAC 682
||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 ATCTTATTGGAAACTGATTCACCAGATGCACTACCAAAGGCAGAGTCAGGTTCTCTCTAC 660
Query 683 TTTGTAGACGGAGATCCTTCTCTACCCGAAGAAGGAAATTCAGCTCAGGATCTTGATTCT 742
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 661 TTTATAGACGGAGATCCTTCTCTACCCAAAGAAGGAAATTCAGCTCAGGATCTTGATTAT 720
Query 743 GCTTCATATGATAAGCCTAATGTGTCTAGTGACTCGATGAAGTTAACAAAGGAAACACTT 802
|||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 721 GCTTCAAATGATAAGTCTAATGTGTCTATTGACTCGATGAAGTTGCCAAAGGAAACACTT 780
Query 803 AATCACCCGGCTAATATTCATATCGTACTCGGATATGTAGCGCAGTTGTTGGATATGAAG 862
||||| ||||||||||||||||| |||||||| |||||||| | ||||||||| ||||||
Sbjct 781 AATCATCCGGCTAATATTCATATGGTACTCGGGTATGTAGCACGGTTGTTGGACATGAAG 840
Query 863 AATGAAGAACTCGCGGAACTAAGTTATCAAAATGCTGTTCGGTTATTCTCTTACGAAGGT 922
|||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 841 AATGAAGAACTCGCAGAACTAAGCTACCAGAATGCTGTTCGGTTATTCTCTTACGAAGGT 900
Query 923 TCAAAGATACTTCTTGACAGAGGTACTGGTGATGTCTCTGGTCACACTCAAAACCAGTCA 982
|| ||||| |||||||| |||||||||||||||||||||||||||| ||||||||| | |
Sbjct 901 TCGAAGATGCTTCTTGAGAGAGGTACTGGTGATGTCTCTGGTCACAATCAAAACCATTGA 960
Query 983 ACAACACATGTATCATGA 1000
||||||||||||||||||
Sbjct 961 ACAACACATGTATCATGA 978
> Ahg317188 jgi|Araly1|317188|fgenesh1_pm.C_scaffold_3000204
Length=819
Score = 370 bits (200), Expect = 1e-101
Identities = 519/665 (78%), Gaps = 54/665 (8%)
Strand=Plus/Plus
Query 23 ATGAAACTGTTCGACGCGCACTGTCACCTTCAAGACCCGAGGATTATC-ACCAAAG-CTC 80
||||| |||| || || || || |||||||||||| |||| | ||| | ||||| ||
Sbjct 1 ATGAAGTTGTTTGATGCTCATTGCCACCTTCAAGACAAGAGGGTCATCGA-CAAAGCCT- 58
Query 81 CTCAGAT-A-ATCTCCTCCGCCGTT-GCT-TCCGGCGTCT-CTGCTTTCGCCGTCAATGG 135
||||| | | |||| || | | || ||| | ||| || | | |||||| ||||||||
Sbjct 59 CTCAGCTCATATCTGCT--G-CTTTAGCTGT-CGGTGT-TACCAATTTCGCTGTCAATGG 113
Query 136 AGTCTCCGAGAAAGATT-GGAGTTTGGTCAAAGAGATGGGAGCTAAATACCCTTCTGTTG 194
| |||||||||||||| ||| ||||| ||||||||||||| | || ||||||||||
Sbjct 114 AACCTCCGAGAAAGATTGGGA-CTTGGTGAAAGAGATGGGAGAGACGTATCCTTCTGTTG 172
Query 195 TTCCTTGCTTTGGGA-TCCATCCATGGTATGTAGCAGAGAGGAGTCCTCAATGGTTTGAG 253
||||||||||| ||| | ||||| |||| | | || || || || ||||| |||||| ||
Sbjct 173 TTCCTTGCTTT-GGACTTCATCCTTGGTTTATTGCTGATAGAAGCCCTCATTGGTTTAAG 231
Query 254 ACATTAAAG-AGTTTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTGGA 312
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ACATTGAAGAAG-TTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTGGA 290
Query 313 CAAAGGGTC--TAAG--GGAAGGGAGATTGATTTCTCAGAACAGGTTAC-CGTCTTTCGT 367
|||||| || | || ||| || | ||||||| |||||| ||| | | ||| |||||
Sbjct 291 CAAAGG-TCCCTTAGCAGGA-GG-A-ATTGATTACTCAGACCAGCT-AGTCGTGTTTCGC 345
Query 368 CAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGC-GTCAGTTCATTGTGTTCG-TG 425
| |||||||||||||||||| ||| |||| ||||| | | |||||||||| | || ||
Sbjct 346 CCACAGCTTGAACTTGCAAAAGAACTGAACAAACCAGTAG-CAGTTCATTGCAT-CGATG 403
Query 426 CATTTGGGGATCTACTCGAGATATTAAAATCTGTAGGGCCTTTTCCTTCTGGGGTCATGC 485
|||| | ||||| ||||||||| | | ||| ||||||||||||||| |||| || || |
Sbjct 404 CATTCGATGATCTCCTCGAGATAATGAGATCCGTAGGGCCTTTTCCTGCTGGTGTGATTC 463
Query 486 TTCACTCGT--ATTTGGGTTCTGCTGA-GATGGTTCCTGAATTTGCTAAGCTCGGTGCAT 542
|||| || | | | || ||| ||||| | || ||||| || | ||| |||| |||||||
Sbjct 464 TTCATTCATTCAAT-GG-TTCAGCTGAAGTTG-TTCCTAAACTCGCTGAGCTTGGTGCAT 520
Query 543 A-TT-TCTCCTTCTC-C-GGTTTC-CTTATGTCCATGAGTGAGAAAAAAGCCAAGAAGA- 596
| || ||| |||| | |||| | ||||| | ||| |||||||| || |||||||
Sbjct 521 ACTTGTCTTTTTCTGGCTGGTT-CACTTATAT---TGA-TGAGAAAATTGCGAAGAAGAC 575
Query 597 TGTTGAAAGC-AGTTCCATCTGATAGGATCTTATTGGAGACGGATTCACCAGATGCACTA 655
| |||||| | | |||| || |||||| |||||||||||||||||||||| |||| ||
Sbjct 576 T-TTGAAATCGA-TTCCTTCCGATAGGTTCTTATTGGAGACGGATTCACCTGATGGGTTA 633
Query 656 CCAAA 660
|||||
Sbjct 634 CCAAA 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45251902479
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5