BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17580.1
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893671 jgi|Araly1|893671|Al_scaffold_0006_1667 2460 0.0
> Ahg893671 jgi|Araly1|893671|Al_scaffold_0006_1667
Length=1641
Score = 2460 bits (1332), Expect = 0.0
Identities = 1536/1633 (94%), Gaps = 20/1633 (1%)
Strand=Plus/Plus
Query 9 ATCATATGTATCAGATCTTCATATCAACGTTAAGGGTGTTCCATTTCATCTTTGCAAAGA 68
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 12 ATCATATGTATCAGATCTTCATATAAACGTAAAGGGTGTTCCATTTCATCTTTGCAAAGA 71
Query 69 AATGTTAGCAAAGAGATCGTCCAAAGTGAGCTCATTACTCGAGCGAAACGAGATCGATGA 128
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 72 AATGTTAGCAAAGAGATCGTCGAAAGTGAGCTCATTACTCGAGCGAAACGAGATCGATGA 131
Query 129 GCTGCGTTTGATCCTACGAGATTTAGAAGTCGATCCAGAAACCTTTGAGCTCGTCGCTAG 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 132 GCTGCGTTTGATCCTACGAGATTTAGAAGTCGATCCAGAAACCTTTGAGCTCGTTGAAAG 191
Query 189 ATTCTGTAATGGCTCTGAATTCAAGTTTACATCTGATACCATCGTCTCTGTTCTCTGCAT 248
||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 192 ATTTTGTAATGGCTGTGAATTCAAGTTTACGTCTGATACCATCGTCTCTGTTCTCTGCAT 251
Query 249 CGCGTATTACTTAGGGATGAATGAAGAACAAAGCTCTAATAACTTGTTAGGCAAGGCATC 308
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 252 CGCGTATTACTTAGGGATGAATGAAGAACAAAGCTCTAATAACTTGTTGGGTAAGGCATC 311
Query 309 TGAGTTCTTAGAGCACCGAGTTTTTCCGAGCTGGAGTGAGACAATAAATGCTCTTCGTTC 368
||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 312 TGAGTTCCTAGAGCAACGAGTTTTACCGAGCTGGAGTGAGACTGTAAATGCTCTTCGTTC 371
Query 369 AGGGGACAAGAGTTTTGACAAGCTAGCTGATGTTGGACTTGTTGATGTGTTCTTTGATTC 428
||||||||||||||| ||||||||| ||||||||||||| |||||| | |||||||||||
Sbjct 372 AGGGGACAAGAGTTTCGACAAGCTAACTGATGTTGGACTCGTTGATCTCTTCTTTGATTC 431
Query 429 CCTTATCGAAAAAGCTTCCTACGATCCAAGACTCCTTGGTGAACTGATCAAGAACAGAGC 488
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CCTTATCGAAAAAGCCTCCTACGATCCAAGACTCCTTGGTGAACTGATCAAGAACAGAGT 491
Query 489 AGAAACCGATGATTATAGACCTAACCCTAGGAGAAGATTGTTTGTTATAGATTGGAAATC 548
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 492 GGAAACCGATGATTATAGACCTAACCCTAGGAGACGATTGTTTGTTATAGATTGGAAATC 551
Query 549 GGAAGATTTGATCACAATTCCCCTTCGGTTATATGAACCTTTCATGATCCGAGCAATCAA 608
||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 552 GGAAGATCTGATCACAATTCCACTTCGGTTATATGAACCTTTGATGATCCGAGCAATTAA 611
Query 609 ATCCCGCAGCATTCCTGTGGAATACATCGTGTTATCTGTCTGTAAATACGCGAAGAAATG 668
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 612 ATCCCGCAGCATTCCCGTGGAATACATCGTTTTATCGGTCTGTAAATACGCGAAGAAATG 671
Query 669 GGTTTTCGATACAGAAGAAAGCCTTTCAGGGCAAAAGAGAGAAGCAATTGAAGTGGTTGA 728
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 672 GGTTTTCGATGCAGAAGAAAGCCTTTCAGGGCAAAAGAGAGAAGCAATTGAAGCGGTTGA 731
Query 729 GAGGCTTTTGCCATATCAGAGGGGGCTAATCTCTTGTGAACTCTTATTCGAATCGCTAAA 788
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GCGGCTTTTGCCACATCAGAGGGGGCTAATCTCTTGTGAACTCTTATTCGAATCGCTAAA 791
Query 789 ACATTCAATCTGGTTAGAAGCTAGCTCTGAATGTCAAAACGGATTCATGATCAGAATCTG 848
||||| |||||||||||||| | ||| ||||||| ||| ||||||||||||||||||||
Sbjct 792 GCATTCGATCTGGTTAGAAGCCAACTCCGAATGTCGAAATGGATTCATGATCAGAATCTG 851
Query 849 CAAGCAGCTCGACATGGCTAAATCAACTGATCTCAAGATTCTATCCCGAGGTTATGGAGA 908
|||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 852 CAAGCAACTCGACATGGCTAAATCAACAGATCTCAAGATTCTATCCCGAGGATACGGAGA 911
Query 909 AAAAGCTGAGGGTTTCGAAAATATTGAGCTCGTTAAGACCGTCGTAAAGAGCTTTTACAC 968
|||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 912 AAAAGCTGAGGGTTACGAAAATATCGAGCTCGTTAAAACCGTCGTAAAGAGCTTTTACAC 971
Query 969 TTACTACGCTAATGAAGACTCTGAAACTGTTTCACATTTCGTGAAAGTAGCAAAACTGTC 1028
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 972 TTACTACGCCAATGAAGACTCTGAAAATGTTTCACATTTCGTGAAAGTAGCAAAACTGTC 1031
Query 1029 GGAAGAATTTCTGTTCTTGGCTGCAAGTGAGGCTTCTCTGAAGCTCGAGGCTTTTGTGGA 1088
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1032 GGAAGAATTTCTGTTCTTGGCTGCGAGTGAGGCTTCTCTGAAGCTCGAGGCGTTTGTGGA 1091
Query 1089 GTTAGCGGAGATGACAGTGGCTGTTTCGCAAGGTATTTTGAGCTACTCAGATGGGATTTA 1148
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1092 GTTAGCAGAGATGACAGTGGCAATTTCGCAAGGTATTTTGAGCTACTCAGATGGGATTTA 1151
Query 1149 CAGAGCCATTGATGTATTCTTGGAGAGCCATAGATACTTAACTGAATCAGAGAAGATGGA 1208
||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1152 CAGAGGCATTGATGAATTCTTGGACAGCCACAGATACTTAACTGAATCAGAGAAGATGGA 1211
Query 1209 AGTTTGTAAAGTTCTTGAATGTGGTAAACTCTCTCAGGAAGGATTCGAACGAGCCGCGAA 1268
|||||||||||||||||||| | ||||||||||||| ||||||| ||| ||||||||||
Sbjct 1212 AGTTTGTAAAGTTCTTGAATATAGTAAACTCTCTCAAGAAGGATGCGAGCGAGCCGCGAG 1271
Query 1269 AAACCAGAAGCTTCCTCTTAGAATCGTTGTT-AATGTTTTGTGCGTTTCTCAGCTTCAGA 1327
|||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||||
Sbjct 1272 AAACCAGAAGCTTCCTGTTAGAATCGTTGTTCAA-GTTTTGTTTGTTTCTCAGCTTCAGA 1330
Query 1328 TACGTGATACAGTGGCTAAAGAGATTAAGGGTATGgaagagaaagtagatgaagaagaag 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 TACGTGATACAGTGGCTAAAGAGATTAAGGGTATGGAAGAGAAAGTAGATGAAGAAGAAG 1390
Query 1388 aagaagaaATTGAGGTTTCGAGCGATGAAGATGAGATGGAGAAGATGAGTAATAAGTTAT 1447
|||| || ||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1391 AAGA-GA--TTGGGGTTTCGAGCGATGAAGATGAGATGGAGAAGATGAGTAATAAGCTGT 1447
Query 1448 TAGGACTTGAGATTGAGAATGATGAATGTGTTGTTCATCGTCGgaagaatatgaagaaga 1507
|||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||
Sbjct 1448 TAGGACTTGAGATTAAGAATGATGAATGTGTTGTTCATCGTTGGAAGAA---GACGAAGA 1504
Query 1508 agaagaagaagaTAAGTGTGTGGGGGCAAGTGAAGAGGAAGTTTGGTTGCTTGAAttctt 1567
||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1505 AGAAGAAGA---TAAGTGTGTGGGGACAAGTGAAGAGGAAGTTTGGTTGCTTGA---CTT 1558
Query 1568 cttcttcttcttATTCAGTTGATGCTTGCACCTGTGATGTCaagaagaagaagaagaaga 1627
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CTTCTTCTT---ATTCAGTTGATGCTTGCACCTGTGATGTCAAGAAGAAGAAGAAGAAGA 1615
Query 1628 ---TTCATCATCA 1637
||||||||||
Sbjct 1616 AGATTCATCATCA 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67343553160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5