BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17590.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941270 jgi|Araly1|941270|scaffold_601814.1 826 0.0
> Ahg941270 jgi|Araly1|941270|scaffold_601814.1
Length=645
Score = 826 bits (447), Expect = 0.0
Identities = 556/604 (92%), Gaps = 26/604 (4%)
Strand=Plus/Plus
Query 1 ATGGATCAGAGAAAAGGTGATCCAAGAATATACATTATCACTGTTCTCTTCCTTTCATGT 60
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 21 ATGGATCAGAGAAAAGGTGATCCAAGAATATACATTGTCACTTTTCTCTTCCTTTCATGT 80
Query 61 ATCCTCATAGGAGGAGTCCTTTTAGGACTTTACCTGGTCCGTTCTGATCCGAACCCTCTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 ATCCTCATAGGAGGAGTCCTTTTAGGACTTTACCTGGTCCGTTCTGATCCGAACCCTCTG 140
Query 121 TTTCTACAAGCGGGTATGGTCTTTGTTGGTGTCCCTTGGCTCTTTTGGTTCTTGGCTTAC 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 141 TTTCTACAAGCGGGTATGGTCTTCGTTGGTGTCCCTTGGCTCTTTTGGTTCTTGGCTTAC 200
Query 181 GTTTACTCCTGCGTCCTCAAACCTTGCGTCATCTTTGTTAGCCAGAGCACCATCTTTAAT 240
||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |
Sbjct 201 GTTTACTCCTGCGTCCTCAAACCTTGCATCATCTTTGTTAGCAAGAGCAGCATCTTTGTT 260
Query 241 AGCAAGAGCGTTACCAGTTTCGATCCGGAGAAAGGCGATCC-----------T-AA---C 285
|||||||||||||||||||||||||| |||||||||||||| | || |
Sbjct 261 AGCAAGAGCGTTACCAGTTTCGATCCTGAGAAAGGCGATCCGGAGAAGAACGTCAATAAC 320
Query 286 AAGGCTCCGGAAACCGTCACGACAACTTCGGATCCGGCGCCGAGGAATTCACCGAGGGAA 345
|||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 321 AAGGTTCCGGAAAACGTCACGGCAACTTCGGATCCGGCGCCGAGGAATTCACCGAGGGAA 380
Query 346 GGTGAGAAGCACGTGCAATTCGGGAATGTGGTGGTTCTTGGGGATGAAGAA-G-GT--G- 400
||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 381 GGTGAGAAGCATGTGCAATTCGGGAATGTGGTGGTTCTTGGGGATGAAGAAAGAGGCAGA 440
Query 401 GAA--A-A-GAGGAAGATCACAACGAGAGTAGTTCTAATAATCTGATTCAGGATCATATG 456
||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GAAGGAGAAGAGGAAGATCACAACGAGAGTAGTTCTAATAATCTGATTCAGGATCATATG 500
Query 457 CGAATCGAAGAAGAAGAAGATCAAGAAAATGGTAGATCGAATTCAAAGA-GCGATGATGA 515
||||| |||||||||||| ||||||||||||||| ||||||||||| || ||||||||||
Sbjct 501 CGAATGGAAGAAGAAGAAAATCAAGAAAATGGTACATCGAATTCAA-GAAGCGATGATGA 559
Query 516 TGAGAGTAGTGTCGATGAGGACTGCGATAGGACTCCATTAAGAGTATCGAACGGAAACAA 575
||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||
Sbjct 560 TGATAGTAGTGTCGATGAGGACTGCGATAGGACTCCATTGAGATTATCGATTGGAAACAA 619
Query 576 ATGA 579
||||
Sbjct 620 ATGA 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5