BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17610.1
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488628 jgi|Araly1|488628|fgenesh2_kg.6__1762__AT5G17610.1 715 0.0
> Ahg488628 jgi|Araly1|488628|fgenesh2_kg.6__1762__AT5G17610.1
Length=582
Score = 715 bits (387), Expect = 0.0
Identities = 454/484 (94%), Gaps = 14/484 (3%)
Strand=Plus/Plus
Query 29 CTGGAACTAGCCACTGCGATCGGAGAAG-AA-AA-----A--G-CTCGAGAGACGCCATG 78
|||||||||||||||||||||||||||| || || | | ||||||||||||||||
Sbjct 1 CTGGAACTAGCCACTGCGATCGGAGAAGAAACAAGCTCGAGTGTCTCGAGAGACGCCATG 60
Query 79 GAAATTTCCCAAGCTCGTTCAAGCTTCGTTTGTCTTCTTCTTCTGTTACTCTCCATGTGT 138
|||| ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 61 GAAAATTCCCGAGCTCGTTCAAGCTTCGTTTG---TCTTCTTCTGTTACTCTCTATGTGT 117
Query 139 TTCGTTCCCTGCGTCTTTTCCAAATCTCCTCGTCCTATCTCCGATGTGGAGATCAGGCAG 198
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 118 TTCGTTCCCTGCGTCTTTTCCAAATCTCCTCGTCCCATCTCCGATGTAGAAATCAGGCAG 177
Query 199 AAGAAGAGCGAATGCTACGGTGATATAGAGAGTGGGTTATGGGGTTGGCAATGCAAATCT 258
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AAGAAGAGCGAATGCTACGCTGATATAGAGAGTGGGTTATGGGGTTGGCAATGCAAATCT 237
Query 259 TCTGCAATAGCGAAAGAGAATTGTGCGCTGCGATGCCTTTCTCCGGTTTGCTATCAACTC 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCTGCAATAGCGAAAGAGAATTGTGCGCTGCGATGCCTTTCTCCGGTTTGCTATCAACTC 297
Query 319 ATTTATGAGAGTGATCCGCTTGAAGAAGGTGAAAAAGATTTGATTAGGAGCCAAGAGTAC 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATTTATGAGAGTGATCCGCTTGAAGAAGGTGAAAAAGATTTGATTAGGAGCCAAGAGTAC 357
Query 379 AAGTATTGTATGTACAAGTCATCACTCGGGGAAAGCTTAGAGGGTGTTCGAGGCATCTTT 438
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 358 AAGTATTGTATGTACAAGTCATCACTCGGGGAAAGCTTAGACGGTGTCCGAGGCAGCTTT 417
Query 439 TGATGGTATCAAATAAGACTTTCTCAGTGAAGACATTTGCCAAAATCTGAGCTAAGCTCT 498
|||||||| |||| || | ||||||| |||||||||||||||||| ||||||||||||||
Sbjct 418 TGATGGTA-CAAAGAAAAGTTTCTCAATGAAGACATTTGCCAAAAGCTGAGCTAAGCTCT 476
Query 499 TGAA 502
|||
Sbjct 477 CGAA 480
Score = 152 bits (82), Expect = 3e-36
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 537 GAAGCCATGTAAGGCTTCTTTTATTATAAACCTCAATTTTTGGGTTAATGGTTGTTTATA 596
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 478 GAAGCCATGTAAGGCTTCTTTTGTTATAAACCTCAATTTTTGCGTTAATGGTTGTTTATA 537
Query 597 TGAAACGTTTACGTTTATGATTGGCAAA 624
||||||||||||||||||||||||||||
Sbjct 538 TGAAACGTTTACGTTTATGATTGGCAAA 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25389862722
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5