BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17620.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488629 jgi|Araly1|488629|fgenesh2_kg.6__1763__AT5G17620.1 2013 0.0
> Ahg488629 jgi|Araly1|488629|fgenesh2_kg.6__1763__AT5G17620.1
Length=1225
Score = 2013 bits (1090), Expect = 0.0
Identities = 1185/1230 (96%), Gaps = 9/1230 (1%)
Strand=Plus/Plus
Query 36 ACGAGACTAGTGTCAGATCTCGAGATTTGAATCGGTGTTGAAGCCGTCGCCAGAATCAGT 95
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1 ACGAGGCTAGTGTCAGATCTCGAGATTTGAATCGGTGTTGAAGCCGTCGCCGGAAT-TGG 59
Query 96 TGGA-TAGGAAAATGGCGGCGAAGCAAATGGAAGAGATACAGAAGAAGCTACGGCTGCTA 154
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 TGGAGAAGGAAAATGGCGGCGAAGCAAATGGAAGAGATACAGAAGAAGCTAGGGCTGCTT 119
Query 155 AGTTACCCTAGGGCAAATGCTCCAGCTCAGTCTCTCCTCTTCGCCGGGATGGAACGTTAT 214
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 AGTTACCCTAGGGCAAATGCTCCAGCTCAGTCTCTCCTCTTCGCTGGGATGGAACGTTAT 179
Query 215 GCTCTTCTCGAATGGCTCTTTTTCAAGTTATTAGGTGATAAATCACCTTTCTCACAGCAA 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCTCTTCTCGAATGGCTCTTTTTCAAGTTATTAGGTGATAAATCACCTTTCTCACAGCAA 239
Query 275 AATCTCCAAGGAGATGCTGGAGTTCGTGATGAAGAAACTGTTCGTATTCAATATTTGGCA 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AATCTCCAAGGAGATGCTGGAGTTCGTGATGAAGAAACTGTTCGTATTCAATATTTGGCA 299
Query 335 GAGATTGCAAAGTTTTTGGGGATTACACCAACTGTAGACATTGAAGCCATTCAAGGACAT 394
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct 300 GAGATCGCAAAGTTTTTGGGGTTTACACCAACTGTAGACATAGAAGCCATTCAAGTACAT 359
Query 395 GGAACCTATGAAGATCGGATGGAAATGCTTCGCAATATTGTTGATTTAGTGGAGGCGAGC 454
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 GGAACCTATGAAGATCGGATGGAAATGCTTCGCAATATTGTTGATTTAGTGGAGGCAAGC 419
Query 455 CTCTTCTCAGATAATCAAGAATGGAGTATTGATGAGCAAGTTGCCAAAGATATTCAGCTC 514
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 CTCTTCTCAGATAATCAAGAATGGAGTATTGATGAGCAAGTTGCCAAAGATATCCAGCTC 479
Query 515 ATAGATGCTATTGCAGAGAGACAGTCTCTTATATTTTCTGAGGAATGCAAACTGTTCCCT 574
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATAGATGCTATTGCAGAGAGACAGTCTCTTATATTTTCTGAGGAATGCAAACTGTTCCCC 539
Query 575 GCTGATGTGCAGATCCAGTCGATATATCCATTACCAGATGTTTCAGAACTGGAGACAAAA 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTGATGTGCAGATCCAGTCGATATATCCATTACCAGATGTTTCAGAACTGGAGACAAAA 599
Query 635 CTTTCAGAACAGGCCAAGATTCTCTCTAATCTTCAACAGAAAGTCGATGACTTGGCAGCA 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTTCAGAACAGGCCAAGATTCTCTCTAATCTTCAACAGAAAGTCGATGACTTGGCAGCA 659
Query 695 AAGCATGCTTACAACCCAGATGAAGAATATACTGAAGTGGAATCTCAACTAAGGGCTCGT 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 AAGCATGCTTACAACCCAGATGAAGAATATACTGAAGTGGAATCTCAACTAAGGGCTTGT 719
Query 755 TTAGAATCGTTTCTTGAAACAGCTAGGGCATTCAATACAATCTACACAAAGGAAATTCGT 814
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTAGAATCGTTTCTTGAAACTGCTAGGGCATTCAATACAATCTACACAAAGGAAATTCGT 779
Query 815 CCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTGGTCCTGCTGCAAACCGT 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTGGTCCTGCTGCAAACCGT 839
Query 875 TTACTAGAAGCATATAATATGCTTTTAAAGTTCCTAGGGAACTTGAAGAACCTAAGAGAC 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTACTAGAAGCATATAATATGCTTTTAAAGTTCCTAGGGAACTTGAAGAACCTAAGAGAC 899
Query 935 TCACATGCAGCACTTTCGATTGGATCCTCGGGGACAGTTGCTGGAGAGCCATCCTCTGTA 994
||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||
Sbjct 900 TCACATGCAGCACTTTCAATTGGATCATCGGGGACAGTTGCTGGAGAGCCGTCTTCTGTA 959
Query 995 ACCAGAATCGTATCCGACTGTGAAGCTGCATTAACTGTTCTCAATCGAGATCTTGGAATC 1054
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACCAGAATCGTATCTGACTGTGAAGCTGCATTAACTGTTCTCAATCGAGATCTTGGAATC 1019
Query 1055 CTCTCGGCTTCTATTGCTCGTGAGCAAGGTGAGCGTCTTTAACTGTCTTGAGTTGACCAC 1114
|||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 1020 CTCTCGGCTTCTATTGCTCGTGAGCAAGGTGAGCGTCTATAACCGTCTCGAGTTGACCAC 1079
Query 1115 ACTTGATAAAGGGTTCAACTCCATGAATGTGATGAGTTGTATTCGTTAGAAATCATTTTA 1174
|||||| ||||||||| |||||||||||||| ||| ||||||| | ||||||||||||||
Sbjct 1080 ACTTGA-AAAGGGTTCTACTCCATGAATGTGTTGACTTGTATTTGGTAGAAATCATTTTA 1138
Query 1175 GGG-TGGATGTTTTGATCTCAAGAATTGTA-A-CTCTTTTCAGCACTTTTTTGCTTCTGT 1231
||| || || ||| |||||||| |||||| | |||||||||||||||||| ||||||||
Sbjct 1139 GGGGTGTAT-TTTA-ATCTCAAGGATTGTATAACTCTTTTCAGCACTTTTT-GCTTCTGT 1195
Query 1232 CAATTAACCAAATCAAATCTAAAGGTAAAA 1261
| ||||||||||| |||||||||||||||
Sbjct 1196 TATTTAACCAAATCTAATCTAAAGGTAAAA 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5