BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17630.1
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941274 jgi|Araly1|941274|scaffold_601818.1 2100 0.0
> Ahg941274 jgi|Araly1|941274|scaffold_601818.1
Length=1294
Score = 2100 bits (1137), Expect = 0.0
Identities = 1238/1287 (96%), Gaps = 6/1287 (0%)
Strand=Plus/Plus
Query 132 TGCTTAAACAATGATCTCCCTGAATCTATCTCCTTCCCTCAATCCGGGTCTCCTCCACAA 191
||| ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 11 TGCCTAAGCAATGATCTCCCTGAATCTATCTCCTTCCTTAAATCCGGGTCTCCTCCACAA 70
Query 192 GACCCGGA-CCTGTCAACAACCGACCCGTCTCTCTGCTCTTCTCGTCACCAACCCTAAAC 250
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 GACCCGGAGCC-GTCAACAACCGACCCGTCTCTCTGCTCTTCTCGTCACCAACCCTAAAC 129
Query 251 CCTTCAATCACAGACACCCACTAGGGCTTTCACCGATTCCCAATCTCCAGATTCGTGATG 310
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 130 CCTTCAATCACAGATACCCACTAGGGCTTTTACCGATTCCCAATCTCCAGATTCGTGATG 189
Query 311 TTTCCGCAAAACCCTTGCTTTCACTCACAAACCCTGAATCCTCATCTGGGTTCTCGAGAA 370
||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 190 CCGCCGCAAAACCCTTGCTTTCACTCTCCAACCCTGAGTCCTCATCTGGGTTCTCGAGAA 249
Query 371 AACCCAGATCCATCGCCGCCGTTGGCTCATCGGATTCAAATCCAGACGAAAAATCCGATC 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AACCCAGATCCATCGCCGCCGTTGGCTCATCGGATTCAAATCCAGACGAAAAATCCGATC 309
Query 431 TTGGTGAAGCGGAGAAGAAAGAGAAGAAGGCTAAGACTCTTCAGCTAGGGATTGTGTTTG 490
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 310 TTGGCGAAGCGGAGAAGAAAGAGAAGAAAGCTAAGACTCTTCAGCTAGGGATTGTGTTTG 369
Query 491 GTCTTTGGTATTTCCAGAACATCGTCTTCAACATCTTCAACAAAAAGGCACTCAATGTCT 550
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GTCTTTGGTATTTCCAAAACATCGTCTTCAACATCTTCAACAAAAAGGCACTCAATGTCT 429
Query 551 TTCCTTATCCATGGCTTCTCGCTTCGTTTCAGCTCTTCGCAGGTTCTATTTGGATGCTTG 610
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 430 TCCCTTATCCATGGCTTCTCGCTTCGTTTCAGCTCTTTGCAGGTTCTATTTGGATGCTTA 489
Query 611 TCTTATGGTCCTTTAAGCTTTACCCCTGCCCTAAAATCTCCAAGCCTTTTATCATTGCTC 670
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 490 TCTTATGGTCCTTTAAGCTTTATCCTTGCCCTAAAATCTCCAAGCCTTTCATCATTGCTC 549
Query 671 TCCTTGGTCCTGCATTGTTCCACACTATTGGACATATCTCAGCTTGTGTCTCATTCTCCA 730
||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 550 TCCTTGGCCCTGCATTGTTTCACACTATTGGACACATCTCAGCTTGTGTCTCGTTCTCCA 609
Query 731 AAGTCGCTGTTTCGTTCACTCATGTTATCAAATCAGCAGAGCCTGTCTTCTCTGTTATCT 790
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 AAGTCGCTGTTTCTTTCACTCATGTTATCAAATCAGCAGAGCCTGTCTTCTCTGTTATCT 669
Query 791 TCTCGTCTTTACTCGGTGATTCGTATCCGTTAGCTGTCTGGTTATCGATTCTTCCGATTG 850
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 670 TCTCGTCTTTACTCGGTGATTCGTACCCGTTAGCTGTCTGGTTATCGATTCTTCCGATTG 729
Query 851 TTATGGGTTGTTCTTTAGCTGCAGTCACTGAAGTGTCATTCAATTTAGGTGGATTATCAG 910
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 730 TTATGGGTTGTTCTTTAGCTGCAGTCACTGAAGTCTCATTCAATTTAGGTGGATTATCAG 789
Query 911 GAGCTATGATTAGTAACGTTGGTTTTGTCTTGA-GAAACATTTACTCTAAACGTAGCT-T 968
|||||||||||||||| |||||||| ||||| | ||||||||||||||||| | || | |
Sbjct 790 GAGCTATGATTAGTAATGTTGGTTTCGTCTT-ACGAAACATTTACTCTAAAAGAAG-TCT 847
Query 969 ACAGAGCTTTAAAGAGATTGATGGATTGAATCTATACGGTTGCATCAGTATACTCTCTCT 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 ACAGAGCTTTAAAGAGATTGATGGATTGAATCTATACGGTTGCATCAGTATACTCTCTCT 907
Query 1029 GCTTTATCTGTTTCCCGTGGCGATTTTCGTTGAAGGATCACATTGGGTTCCAGGTTACCA 1088
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 908 GCTTTATCTGTTTCCCGTGGCGATTTTCGTTGAAGGATCACATTGGGTTCAAGGTTACCA 967
Query 1089 TAAAGCCATTGCATCTGTTGGGACACCATCAACGTTCTACTTTTGGGTTTTGCTCTCTGG 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TAAAGCCATTGCATCTGTTGGGACACCATCAACGTTCTACTTTTGGGTTTTGCTCTCTGG 1027
Query 1149 TGTCTTCTATCATCTGTACAACCAGTCTTCTTACCAGGCACTCGACGAGATCAGTCCATT 1208
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1028 TGTCTTCTACCATCTGTACAACCAATCTTCTTACCAGGCACTCGACGAGATCAGTCCATT 1087
Query 1209 GACTTTCTCTGTTGGGAACACGATGAAGCGAGTCGTGGTGATTATCTCCACTGTTTTGGT 1268
|||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 1088 GACTTTCTCTGTAGGGAACACAATGAAGCGAGTCGTGGTGATTGTCTCCACGGTTTTGGT 1147
Query 1269 GTTTAGGAATCCTGTTAGACCTCTGAATGCTCTTGGATCAGCCATTGCGATTTTCGGTAC 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GTTTAGGAATCCTGTTAGACCTCTGAATGCTCTTGGATCAGCCATTGCGATTTTCGGTAC 1207
Query 1329 CTTCTTGTATTCTCAGGCCACTGCAAAGAAGAAGAAGATTGAAGTGGGAGGTGATAAGAA 1388
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1208 CTTCTTGTATTCTCAGGCCACCGCAAAAAAGAAGAAGATTGAAGTGGGAGGTGATAAGAA 1267
Query 1389 GAACTAAAGGTTTTAAGTGCAAAACCA 1415
||||||||||||||||| ||||| |||
Sbjct 1268 GAACTAAAGGTTTTAAGGGCAAATCCA 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61058662735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5