BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17640.1
Length=1813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941275 jgi|Araly1|941275|scaffold_601819.1 2093 0.0
> Ahg941275 jgi|Araly1|941275|scaffold_601819.1
Length=1343
Score = 2093 bits (1133), Expect = 0.0
Identities = 1275/1345 (95%), Gaps = 4/1345 (0%)
Strand=Plus/Plus
Query 380 TGGGGAAACATTTCTGACATTTAATGGATCCTCAAG-CTTTCATTCGTCTTTCGGTTGGC 438
|||||||||||||||||| | |||||||||| |||| |||| ||||| ||||| ||||||
Sbjct 1 TGGGGAAACATTTCTGACCTCTAATGGATCCCCAAGCCTTT-ATTCGCCTTTCCGTTGGC 59
Query 439 TCTCTTGCTTTGAGAATTCCCAAGGTCCTTATAAACTCTACTTCAAAATCTAATGAGAAG 498
|||||||||||||||| ||||||| ||||| | |||||| ||||||||||| ||||||||
Sbjct 60 TCTCTTGCTTTGAGAACTCCCAAGATCCTTTTGAACTCTTCTTCAAAATCTGATGAGAAG 119
Query 499 AAGAACTTTTCTTCTCAATGCTCTTGCGAAATAAAACTACGAGGCTTTCCTGTTCAAACA 558
||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 120 AAGAACTGTTCTTCTCAATGCTCTTGTGAAATTAAACTACGAGGCTTTCCTGTTCAAACA 179
Query 559 ACATCTATCCCTTTGATGCCGTCCCTTGATGCAGCTCCTGACCATCACAGTATTTCCACT 618
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 180 ACATCTATCCCTTTGATGCCGTCCCTCGATGCAGCTCCTGACCATCACAGCATTTCCACA 239
Query 619 AGCTTTTATCTTGAAGAATCTGATTTAAGAGCTCTTTTGACACCTGGATGCTTCTATAGT 678
|||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 240 AGCTTTTATCTTGAAGAATCTGATTTAAGAACTCTCCTGACCCCTGGATGCTTCTATAGT 299
Query 679 CCTCATGCTCACTTGGAAATCTCGGTTTTCACGGGTAAAAAGAGTTTGAATTGCGGTGTT 738
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 300 CCTCATGCTCACTTGGAAATCTCGGTTTTTTCGGGTAAAAAGAGTTTGAATTGCGGGGTT 359
Query 739 GGTGGC-AAAAGACAGCAGATTGGGATGTTTAAGTTGGAGGTAGGTCCTGAATGGGGAGA 797
||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 GGT-GCTAAAAGACAGCAGATTGGGATATTTAAGTTGGAGGTAGGTCCTGAATGGGGAGC 418
Query 798 AGGAAAACCAATGATTCTTTTCAATGGTTGGATCAGTATTGGAAAGACCAAGCGGGATGG 857
||||||||| |||||||| |||||||| ||| ||||||||||||||| ||||||||||||
Sbjct 419 AGGAAAACCGATGATTCTATTCAATGGCTGGGTCAGTATTGGAAAGAACAAGCGGGATGG 478
Query 858 TGCTGCAGAGCTTCATTTGAAAGTGAAACTTGATCCTGATCCTCGATATGTTTTTCAGTT 917
|| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 479 TGGTGCAGAGCTTCATTTGAAAGTGAAGCTTGATCCTGATCCTCGATATGTTTTCCAGTT 538
Query 918 TGAGGATGTTACTACCTTGAGCCCTCAGATAGTTCAGCTCCGTGGCTCGGTCAAGCAACC 977
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 TGAGGATGTTACTACCTTGAGCCCTCAGATAGTTCAGCTCCGTGGCTCTGTCAAGCAACC 598
Query 978 TATCTTCAGTTGCAAGTTTAGCAGAGACAGGGTGTCACAGGTGGATCCGTTGAATGGGTA 1037
||||||||||||||| |||||| ||||||||||||| || |||||||||||||| |||||
Sbjct 599 TATCTTCAGTTGCAAATTTAGCCGAGACAGGGTGTCTCAAGTGGATCCGTTGAACGGGTA 658
Query 1038 CTGGTCAAGTTCAGGCGATGGAACTGAGCTTGAGAGTGAGAGACGTGAAAGAAAAGGATG 1097
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 659 CTGGTCAAGTTCAGGCGATGGAACTGAGCTTGAGAGTGAGAGACGTGAGAGAAAAGGCTG 718
Query 1098 GAAGGTGAAGATACATGATCTCTCTGGCTCTGCAGTTGCTGCTGCTTTCATAACAACTCC 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAAGGTGAAGATACATGATCTCTCTGGCTCTGCAGTTGCTGCTGCTTTCATAACAACTCC 778
Query 1158 TTTTGTTCCATCCACTGGATGTGATTGGGTCGCAAAGTCCAACCCGGGTGCTTGGCTTGT 1217
||||| ||||||| ||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 779 CTTTGTCCCATCCAGTGGCTGTGATTGGGTCGCCAAGTCCAATCCGGGTGCTTGGCTTGT 838
Query 1218 GGTCCGGCCTGACCCATCTCGACCAAACAGCTGGCAGCCATGGGGAAAGCTCGAAGCTTG 1277
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 839 GGTCCGGCCTGACCCATCTCGACCCAACAGCTGGCAGCCTTGGGGAAAGCTCGAAGCTTG 898
Query 1278 GCGGGAACGCGGGATCAGAGACTCCGTGTGTTGCAGATTCCATCTTCTATCAAACGGTCT 1337
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 899 GCGAGAACGCGGGATCAGAGACTCCGTGTGTTGCAGATTCCACCTTCTATCAAACGGGCT 958
Query 1338 AGAAGTTGGAGATGTTTTAATGTCTGAAATCCTCATCAGCGCTGAGAAAGGTGGGGAATT 1397
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 959 AGAAGTTGGAGATGTTTTAATGTCTGAAATTCTCATCAGCGCTGAGAAAGGTGGGGAATT 1018
Query 1398 TTTAATCGACACGGATAAACAGATGCTAACAGTTGCAGCTACACCAATTCCAAGCCCGCA 1457
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1019 TTTAATCGACACGGATAAACAGATGCTAACGGTTGCAGCTACCCCAATTCCAAGCCCGCA 1078
Query 1458 GAGTAGTGGAGACTTCTCAGGGTTGGGACAGTGTGTCTCTGGAGGTGGGTTTGTAATGAG 1517
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1079 GAGTAGCGGAGACTTCTCAGGGTTGGGACAGTGTGTCTCTGGAGGCGGGTTTGTAATGAG 1138
Query 1518 CTCGAGAGTGCAAGGGGAAGGGAAAAGCAGCAAGCCCGTTGTACAATTAGCTATGAGACA 1577
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||
Sbjct 1139 CTCGAGAGTGCAAGGGGAAGGGAAAAGCAGCAAGCCTGTGGTACAATTAGCTATGCGGCA 1198
Query 1578 TGTAACTTGTGTGGAAGATGCAGCCATTTTCATGGCACTTGCTGCAGCTGTTGATCTTAG 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGTAACTTGTGTGGAAGATGCAGCCATTTTCATGGCACTTGCTGCAGCTGTTGATCTTAG 1258
Query 1638 CATTCTTGCTTGTAAACCTTTTAGGAGAACGAGTCGGAGAAGGTTCCGGCATTACTCCTG 1697
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CATTCTGGCTTGTAAACCTTTCAGGAGAACGAGTCGGAGAAGGTTCCGGCATTACTCCTG 1318
Query 1698 GTGAAGAAAGGAACTCTCTTTTGTG 1722
||||| ||||||| |||||||||||
Sbjct 1319 GTGAATAAAGGAATTCTCTTTTGTG 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68067267815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5