BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17650.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941276 jgi|Araly1|941276|scaffold_601820.1 627 6e-179
> Ahg941276 jgi|Araly1|941276|scaffold_601820.1
Length=538
Score = 627 bits (339), Expect = 6e-179
Identities = 497/566 (88%), Gaps = 40/566 (7%)
Strand=Plus/Plus
Query 148 TCTGAAATTGAAGTGTG-AAGAAATGGGAAATGATCAACATAACCACAGTGACAGAGGAT 206
||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||
Sbjct 1 TCTGAAATTGAAGTGTGAAAAAAATGGGAAAGGATCAACATAATCACAGTGACAGAGGAT 60
Query 207 TCTTCCACAACTTAGCAGGGTTTGCAGGCGGCCAATACCCGCCTCACGGTCATGGTTACG 266
|||||||| |||||||||||||||||||||| || |||| ||||||| |||||||||| |
Sbjct 61 TCTTCCACCACTTAGCAGGGTTTGCAGGCGGACATTACCGGCCTCACAGTCATGGTTATG 120
Query 267 GTCATCATGGTCACGGTTATGGATCTTCTTATCCATACCCGCCTCCT---CCTCCTCCTC 323
||||||| ||||||||||||| | || |||||||||||||||||||| ||||||| ||
Sbjct 121 GTCATCACGGTCACGGTTATGAAGCTCCTTATCCATACCCGCCTCCTCCCCCTCCTCATC 180
Query 324 ATGGCTATCCACCAGTTGCTTATCCTCCACATGGTGGTTACCCTCCTGCTGGTTATCCTC 383
||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 181 ATGGCTATCCACCAGTTGCTTATCCTCCACACGGTGGTTACCCTCCAGCCGGTTATCCTC 240
Query 384 CCGCTGGTTATCCTCCAGCCGGTTATCCTGCTCACGGTTATCCATCTCACGGTTATCCCC 443
||||||| |||||||| | | ||||||||||||||||||| ||||||
Sbjct 241 CCGCTGGCTATCCTCC------T---C------ACGGTTATCCATCTCACGGCTATCCCG 285
Query 444 GTCCATCTCACTCAGGACATCACCATGGAGGCATAGGAGCGATTATAGCGGGTGGAGTGG 503
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 286 GTCCATCTCACTCAGGACATCACCATGGAGGCATAGGAGCAATTATAGCGGGTGGAGTGG 345
Query 504 CTGCAGCAGCTGGTGCTCACCATATGTCTCACCACCATGGACACTATGGTCACCACCAT- 562
|||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 346 CTGCAGCAGCTGGTGCTCACCATATGTCTCACCA---TGGACACTATGGTCATCATCATC 402
Query 563 --GGTCATGGCTATGGCTACGGGTATCACGGTCACGGGAAGTTCAAACACGGTAAGTTCA 620
||||| ||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 403 ACGGTCACGGCTATGGCTACGGGTATCACGGTCACGGAAAGTTCAAACACGG-AA----A 457
Query 621 AGCACGGAAAATTCGGTAAACACGGCATGTTTGGGAAGCATAAAGGGAAATTCTTCAAGA 680
| | | | || || || |||||||||||||||||||| ||||||||||||||||
Sbjct 458 A-CGC------T--GG-AAGCATGGCATGTTTGGGAAGCATAAGGGGAAATTCTTCAAGA 507
Query 681 AATGGAAGTGATTGTTTTCCAAAAGA 706
||||||||||||||||||||||||||
Sbjct 508 AATGGAAGTGATTGTTTTCCAAAAGA 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5