BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17660.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350872 jgi|Araly1|350872|fgenesh1_pg.C_scaffold_6001465 1339 0.0
> Ahg350872 jgi|Araly1|350872|fgenesh1_pg.C_scaffold_6001465
Length=918
Score = 1339 bits (725), Expect = 0.0
Identities = 862/926 (93%), Gaps = 18/926 (2%)
Strand=Plus/Plus
Query 54 ATGGCTTCTCTATGTCAAGCTTGCTCTTCGTCTTCAG-CTACACCATTGCTCCTGGCGAA 112
|||||| |||| ||||||||||||||| | ||||| | ||| ||||||||| ||||||||
Sbjct 1 ATGGCTGCTCTTTGTCAAGCTTGCTCTACATCTTC-GACTAGACCATTGCTTCTGGCGAA 59
Query 113 AAGGGTGTTCTCCTT-AGCATCATCTCCGTTTATCTTCATGAG-GGAACACAAAATCCCT 170
||||||||| ||||| | | || || |||| |||||||| || || ||| |||||| ||
Sbjct 60 AAGGGTGTTTTCCTTCA-CTTCGTCGCCGTATATCTTCACAAGCGG-ACATAAAATCTCT 117
Query 171 CGCCATTGTAACAGCTTTAGAGCATTTAATGCCGTTTCTGCGTCTTCGTCAGCGTCTACC 230
|||||||||| |||||| |||||| | | || ||| ||| || | |||||||||
Sbjct 118 CGCCATTGTAGCAGCTTCAGAGCA-TCCA--CC--TTC-GCG---TC-T--GCGTCTACC 165
Query 231 TCAGTTTGTGTCGATTTTAAGGATCTGAGAAGCAATGAATTGGTGGAATTGGAGTATGCA 290
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 166 TCAGTTTGTGTCGATTTAAAGGATCTGAGAAGCAATGAATTGGTGGACTTGGAGTATGCA 225
Query 291 GAACTTAACCTCAATCATAAGATATCTGAAGAAGTGGGTCATGTAAGAATCAGACAGCAT 350
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 GAACTAAACCTCAATCATAAGATATCTGAAGAAGTGGGTCATGTAAGAATCAGACAGCAT 285
Query 351 GTTAATCCTCTCAGTTCCTCTTTCTCTAAACCAGCTCCAGTTCCTGTTTGGGATGAAGTT 410
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 GTTAATCCTCTCAGTTCGTCTTTCTCTAAACCAGCTCCAGTTCCTGTTTGGGATGAAGTT 345
Query 411 TATAAGGATCCATCACTTCCTCTTATGGTGGATATTGGAAGTGGTAGTGGCAGATTTCTC 470
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TATAAGGATCCCTCACTTCCTCTTATGGTGGATATTGGAAGTGGTAGTGGCAGATTTCTC 405
Query 471 CTATGGCAAGCCAATAAGAATGTTGAATCAAGAAATTACTTGGGGCTGGAAATACGTCAG 530
||||||| ||||||||| |||| |||||||||||||||||||||| ||||||||||||||
Sbjct 406 CTATGGCTAGCCAATAAAAATGCTGAATCAAGAAATTACTTGGGGTTGGAAATACGTCAG 465
Query 531 AAACTGGTCAAGCGCGCCAACTTTTGGGTGAATGAGCTCGGACTTTCAAACGTACACTTC 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 466 AAACTGGTCAAGCGCGCCAACTTTTGGGTGAATGAGCTCGGACTTTCAAACGTACATTTC 525
Query 591 ATATTTGCAAACGCCATGGTTTCTTTTGAACATCTTATATCGAGCTATCCTGGACCATTG 650
||||||||||||||||||||||| |||||||| || |||||||| |||||||||||| ||
Sbjct 526 ATATTTGCAAACGCCATGGTTTCCTTTGAACAACTCATATCGAGTTATCCTGGACCACTG 585
Query 651 GAGATTGTCTCAATCTTGTGTCCGGATCCTCATTTCAAGAAACGTCATCAAAAGAGACGT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GAGATTGTCTCAATCTTGTGTCCGGATCCTCATTTCAAGAAACGTCATCAAAAGAGACGT 645
Query 711 GTTGTTCAAAAGCCTTTGGTGAATTCCATTCTTCAAAACCTAAAACCCGGTGGAAAAATA 770
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 646 GTTGTTCAAAAGCCTTTGGTGAATTCCATTCTTCAAAACCTAAAACCCGGCGGAAAAATC 705
Query 771 TTTGTGCAATCCGATGTGCTGGATGTGGCTCAAGACATGAGAGATCAGTTGGACGAGGAA 830
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 706 TTTGTGCAATCCGATGTGCTGGATGTGGCTCAAGACATGAGAGATCAGTTCGATGAGGAA 765
Query 831 TCAAATGTTCTTCAACACATGGACACAGTTGACACAGAGGATGGGTGGTTAACGGAAAAC 890
|||| |||||||||||||||||| ||||| |||||||| ||||| ||||||| |||||||
Sbjct 766 TCAAGTGTTCTTCAACACATGGAAACAGTCGACACAGAAGATGGTTGGTTAATGGAAAAC 825
Query 891 CCGATGGGTATAAGAACAGAACGAGAGATCCACGCAGAGTTCGAAGGTGCAAGAATCTAC 950
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 826 CCGATGGGTATAAGAACAGAACGAGAGATCCACGCTGAATTCGAAGGTGCAAGAATCTAC 885
Query 951 AGAAGACTTTACCAGAAACGTCAGCT 976
||||||||||||||||||||||||||
Sbjct 886 AGAAGACTTTACCAGAAACGTCAGCT 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5