BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17670.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941278 jgi|Araly1|941278|scaffold_601822.1 1423 0.0
> Ahg941278 jgi|Araly1|941278|scaffold_601822.1
Length=982
Score = 1423 bits (770), Expect = 0.0
Identities = 912/979 (93%), Gaps = 16/979 (2%)
Strand=Plus/Plus
Query 4 ATAGCCACTAACCAAAAAGATGGCCTCGGCGATGGTTACATCGCTCAGGCTGAGGCCAAA 63
|||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 3 ATAGCCACTAGCCAAAAA-ATGGCCTCGGCGATGGTTACATCGTTCAGGCTGGGGCCAAG 61
Query 64 CTTCTCCGCAGCCACGTCACCCTCCTCCTCTTCTTCCGCCGGAAATGTCAAGTACCGACC 123
||||||||| ||||||||||| ||| ||||||||||| | | || || || ||| ||
Sbjct 62 CTTCTCCGCCGCCACGTCACCATCCACCTCTTCTTCCACTAGCAACGTTAAACCCCGTCC 121
Query 124 CGCCGTAATTCTCCCGGGTTTAGGGAATAATACAGGAGACTACAAGAAGCTGGAGGTAAC 183
||| || |||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 122 CGCTGTGATTCTCCCGGGTTTAGGGAACAATTCAGGAGACTACAAGAAGCTGGAGGTAAC 181
Query 184 ATTGGGTGAATACGGTGTTCCTGCTGTGGTTGCAGCTGTATCAAGGCTTGATTGGTTTAG 243
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 182 ATTAGGTGAGTACGGTGTTCCTGCGGTGGTTGCAGCTGTATCAAGGCTTGATTGGTTTAG 241
Query 244 AAATGCAGCCGGTTTGGTTGATCCAGCCTACTGGCGTGGCACGCTCCGCCCTCGTCCTGT 303
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 242 AAATGCAGCCGGTTTGGTTGATCCAGCCTACTGGCGTGGCACGCTTCGCCCTCGTCCTGT 301
Query 304 TCTTGATTGGTACTTGAATAGAATTGATGATGCAGTCCGTGAAGCCAATGAGCTAGCTCA 363
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 302 TCTTGATTGGTACTTGAATAGAATTGATGATGCAGTCCGTGAAGCCAATGAATTAGCTCA 361
Query 364 AGGTCAAGGATTGTGTTTGATTGGACACTCAGCTGGAGGATGGCTTGCTCGAGTTTACAT 423
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AGGTCAAGGATTGTCTTTGATTGGACACTCAGCTGGAGGATGGCTTGCTCGAGTTTACAT 421
Query 424 GGAAGAATACGGAAACTCTGATATCTCCTTGTTGTTGACACTTGGTACGCCTCACTTACC 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GGAAGAATACGGAAACTCTGATATCTCCTTGTTGTTGACACTTGGTACGCCTCACTTACC 481
Query 484 ACCACCGAGAGGACT-TCCGGGGGTTATTGATCAAACAAGAGGTCTTCTCTATTATGTCG 542
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 482 ACCACCGAGAGGACAATCCGGGG-TTATTGATCAAACAAGAGGTCTTCTCTATTATGTCG 540
Query 543 AAGAGAATTGTGCAAAAGCTGTTTACACTCCTGAGCTGAAATATGTCTGTATCGCCGGGA 602
||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 541 AAGAGAATTGTGCAAAAGCCGTTTACACTCCTGAGCTGAGATATGTCTGTATTGCCGGGA 600
Query 603 GATACATTCGTGGAGCTCGTTTGGTTGACAATGCAGATGCAGATATTGATTCTGATGTAA 662
||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||| |
Sbjct 601 GATACATTCGTGGAGCTCGTTTGGTGGACAATGCAGATGCAAACGTTGATTCCGATGTGA 660
Query 663 CTGTTGGAATCGACAGTGGAGAAGGGATTTCAGAACTTGCTATAGCAAGCAACAAGAAGA 722
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTGTTGAAATCGACAATGGAGAAGGGATTTCAGAACTTGCTATAGCAAGCAACAAGAAGA 720
Query 723 GTGGTACTT----------T--CCGTGCTCGTTTTGTAGGGCAAGGATACAAGCAAGTAT 770
| ||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCGGTTCTTCGGGGCCAAGTTTCCGTGCTCGTTTTGTAGGGCAAGGATACAAGCAAGTAT 780
Query 771 GTGGAAGAGCTGATGTGTGGGGTGATGGAGTAGTTCCTGAGGTTTCAGCTCATCTTGAAG 830
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 781 GTGGAAGAGCTGATGTGTGGGGTGATGGAGTGGTTCCTGAGGTCTCAGCTCATCTTGAAG 840
Query 831 GTGCACTTAATGTTAGCTTCGACGGTGTTTACCATTCACCTGTTGGTTCAGACGATGAAA 890
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 841 GTGCACTTAATGTTAGCTTCGACGGTGTTTACCACTCGCCTGTTGGCTCAGACGATGAAA 900
Query 891 CCAGACCTTGGTATGGCTCACCGGTTATTGTAAAGGACTGGATTCACCACCTCCTTGAGT 950
|||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 901 CCAGACCTTGGTATGGTTCACCGGCTATTGTAAAGGACTGGATTCACCACCTTCTTGAGT 960
Query 951 GATTTT-ACAACACTGATT 968
|||||| |||||| |||||
Sbjct 961 GATTTTTACAACATTGATT 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5