BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17690.1 Length=1816 Score E Sequences producing significant alignments: (Bits) Value Ahg893682 jgi|Araly1|893682|Al_scaffold_0006_1678 2013 0.0 > Ahg893682 jgi|Araly1|893682|Al_scaffold_0006_1678 Length=1317 Score = 2013 bits (1090), Expect = 0.0 Identities = 1264/1343 (94%), Gaps = 31/1343 (2%) Strand=Plus/Plus Query 146 ATGAAAGGGGCAAGTGGTGCTGTTAAGAAGAAACCCCAGGTGTTGAACGAAGCTGGTGAG 205 ||||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||| Sbjct 1 ATGAAAGGGGCAAGT--AG-TGTTAAGAAGAAAACCCAGTTGTTGAACGAAGCTGGTGAG 57 Query 206 GCGGAGACGGCGGTGGAAACAGTCGGAGAAAGCCGGAAAATTAGTGGAGACGGTGGGTTT 265 ||||| |||| ||||||| |||||||||||||||||||| || || |||||||||||| Sbjct 58 GCGGATACGGTAATGGAAACTGTCGGAGAAAGCCGGAAAATAAGCGGCGACGGTGGGTTT 117 Query 266 GGCAGTGACGACGGCGGAGGGGGAGGTGGAGGTGGAAGTGGAGAGTCGATTCTTCGCGAG 325 | |||||||||||||||| ||| ||| | ||||||||| ||||||||||||| Sbjct 118 GTCAGTGACGACGGCGGA---GGA---GGA----G--GTGGAGAGTTGATTCTTCGCGAG 165 Query 326 ATTGGTGATGATAGGCCTACggaggatggagatgaagaagaagaagaggacgaggatgaa 385 || ||||||||||||| ||| ||| | |||||||||||||||||||| ||||||||| Sbjct 166 ATGGGTGATGATAGGCGTAC---GGA--G-GATGAAGAAGAAGAAGAGGATGAGGATGAA 219 Query 386 gatgatggaggtgatgaggaagatgaagaaggagaaggagaaggtgggcaagaggaaagg 445 || |||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 220 GACGATGGAGGAGATGAGGAAGATGAAGAAGGAGAAGGAAAAGGAGGGCAAGAGGAAAGG 279 Query 446 CCAAAGCTTGATGAAGGGTTTTATGAAATTGAAGCTATTCGTCGTAAGAGAGTTCGAAAA 505 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 280 CCAAAGCTTGATGAAGGGTTTTACGAAATTGAAGCTATTCGTCGTAAGAGAGTTCGAAAA 339 Query 506 GGCAAGGTTCAGTATCTAATTAAATGGCGCGGATGGCCTGAAACTGCCAACACATGGGAG 565 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 340 GGCAAGGTTCAGTATCTAATTAAATGGCGCGGGTGGCCCGAAACTGCCAACACATGGGAG 399 Query 566 CCTTTAGAGAATCTCCAGTCTATTGCTGATGTTATAGATGCCTTTGAGGGAAGTTTGAAG 625 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 400 CCTTTAGAGAATCTCCAGTCTATTGCTGATGTTATAGATGCATTTGAAGGAAGTTTGAAG 459 Query 626 CCAGGAAAGCCTGGTAGGAAACGGAAGCGCAAATATGCAGGTCCTCATTCTCAGATGAAG 685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 460 CCAGGAAAGCCTGGTAGGAAACGGAAGCGCAAATATGCAGGTCCTCATTCTCAGATGAAG 519 Query 686 AAGAAGCAACGTTTAACATCTACATCACATGATGCTACTGAGAAATCTGACTCTTCTACG 745 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 520 AAGAAACAACGTTTAACATCTACATCACATGATGCTGCTGAGAAATCTGACTCTTCTACG 579 Query 746 TCTCTCAACAACTCTAGCCTTCCTGACATTCCTGATCCACTAGACCTAAGCGGTTCGAGT 805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 580 TCTCTCAACAACTCTAGCCTTCCTGACATTCCTGATCCACTAGACCTAAGCGGTTCGAGT 639 Query 806 CTATTAAATA-GAGATGTGGAAGCG-AAGAATGCTTATGTATCCAACCAAGTTGAAGCCA 863 ||| |||| | |||||| ||||| | |||||||||||||||||||||||||||||||| | Sbjct 640 CTACTAAA-AGGAGATGGGGAAG-GTAAGAATGCTTATGTATCCAACCAAGTTGAAGCTA 697 Query 864 ACAGTGGGAGTGTTGGGATGGCCCGACAAGTTCGTTTGATTGACA-ATGAGAAAGAATAT 922 | || |||||||||||||||| ||||||| ||||||| ||||| | |||||||||||||| Sbjct 698 ATAGCGGGAGTGTTGGGATGGTCCGACAACTTCGTTTAATTGA-AGATGAGAAAGAATAT 756 Query 923 GATCCAACACTTAACGAGCTACGAGGACCAGTCAACAATAGTAACGGTGCAGGATGTTCT 982 ||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||| Sbjct 757 GATCCAACACTTAACGAGCTAAGGGGACCAGTCAATAATGGTAACGGTGCAGGATGTTCT 816 Query 983 CAAGGAGGAGGCATTGGTTCTGAAGGTGATAATGTAAGACCCAATGGCCTTCTCAAGGTT 1042 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 817 CAAGGAGGAGGCATTGGTTCTGAAGGTGATAATGTAAGACCCAATGGCCTTCTCAAGGTT 876 Query 1043 TATCCTAAGGAGCTTGATAAGAACAGTCGTTTCATAGGTGCTAAGCGGAGGAAGTCTGGT 1102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 877 TATCCTAAGGAGCTTGATAAGAACAGTCGTTTCATAGGTGCTAAGCGGAGGAAGTCTGGT 936 Query 1103 TCTGTGAAAAGATTCAAACAAGATGGATCCACAAGTAACAACCACACAGCACCTACAGAT 1162 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 937 TCTGTGAAAAGATTCAAACAAGATGGATCCACAAGTAACAACCACACAGCACCTGCAGAT 996 Query 1163 CAGAATCTGACACCAGATTTGACTACATTAGACTCTTTTGGTAGGATTGCAAGGATGGGG 1222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 997 CAGAATCTGACACCAGATTTGACTACATTAGACTCTTTTGGTAGGATTGCAAGGATGGGG 1056 Query 1223 AATGAATATCCTGGTGTGATGGAAAATTGTAATTTGTCTCAGAAAACCAAGATTGAGGAG 1282 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1057 AATGAATATCCTGGTGTGATGGAAAATAATAATTTGTCTCAGAAAACCAAGATTGAGGAG 1116 Query 1283 TTGGACATCACGAAGATACTTAAACCAATGAG-TTTTACAGCATCTGTATCAGACAATGT 1341 ||||||||||| |||||||||||||| ||||| |||| |||||||||||||||||||||| Sbjct 1117 TTGGACATCACAAAGATACTTAAACCGATGAGCTTTT-CAGCATCTGTATCAGACAATGT 1175 Query 1342 CCAGGAAGTGTTGGTGACCTTTTTAGCGCTGAGGTCTGATGGGAAGGAAGC-ATTGGTGG 1400 |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1176 CCAGGATGTGTTGGTGACCTTTTTAGCGCTGAGGTCTGATGGGAAGGAAGTGAT-GGTGG 1234 Query 1401 ACAACAGATTTCTCAAGGCTCACAATCCTCATCTCCTGATTGAATTCTATGAGCAACATC 1460 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1235 ACAACAGATTTCTCAAGGCTCACAATCCTCATCTGCTGATTGAATTCTATGAGCAACATC 1294 Query 1461 TCAAGTACAATCGAACGCCTTAA 1483 ||||||||||||| ||||||||| Sbjct 1295 TCAAGTACAATCGCACGCCTTAA 1317 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68181538550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5