BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17690.1
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893682 jgi|Araly1|893682|Al_scaffold_0006_1678 2013 0.0
> Ahg893682 jgi|Araly1|893682|Al_scaffold_0006_1678
Length=1317
Score = 2013 bits (1090), Expect = 0.0
Identities = 1264/1343 (94%), Gaps = 31/1343 (2%)
Strand=Plus/Plus
Query 146 ATGAAAGGGGCAAGTGGTGCTGTTAAGAAGAAACCCCAGGTGTTGAACGAAGCTGGTGAG 205
||||||||||||||| | ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1 ATGAAAGGGGCAAGT--AG-TGTTAAGAAGAAAACCCAGTTGTTGAACGAAGCTGGTGAG 57
Query 206 GCGGAGACGGCGGTGGAAACAGTCGGAGAAAGCCGGAAAATTAGTGGAGACGGTGGGTTT 265
||||| |||| ||||||| |||||||||||||||||||| || || ||||||||||||
Sbjct 58 GCGGATACGGTAATGGAAACTGTCGGAGAAAGCCGGAAAATAAGCGGCGACGGTGGGTTT 117
Query 266 GGCAGTGACGACGGCGGAGGGGGAGGTGGAGGTGGAAGTGGAGAGTCGATTCTTCGCGAG 325
| |||||||||||||||| ||| ||| | ||||||||| |||||||||||||
Sbjct 118 GTCAGTGACGACGGCGGA---GGA---GGA----G--GTGGAGAGTTGATTCTTCGCGAG 165
Query 326 ATTGGTGATGATAGGCCTACggaggatggagatgaagaagaagaagaggacgaggatgaa 385
|| ||||||||||||| ||| ||| | |||||||||||||||||||| |||||||||
Sbjct 166 ATGGGTGATGATAGGCGTAC---GGA--G-GATGAAGAAGAAGAAGAGGATGAGGATGAA 219
Query 386 gatgatggaggtgatgaggaagatgaagaaggagaaggagaaggtgggcaagaggaaagg 445
|| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 220 GACGATGGAGGAGATGAGGAAGATGAAGAAGGAGAAGGAAAAGGAGGGCAAGAGGAAAGG 279
Query 446 CCAAAGCTTGATGAAGGGTTTTATGAAATTGAAGCTATTCGTCGTAAGAGAGTTCGAAAA 505
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 280 CCAAAGCTTGATGAAGGGTTTTACGAAATTGAAGCTATTCGTCGTAAGAGAGTTCGAAAA 339
Query 506 GGCAAGGTTCAGTATCTAATTAAATGGCGCGGATGGCCTGAAACTGCCAACACATGGGAG 565
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 340 GGCAAGGTTCAGTATCTAATTAAATGGCGCGGGTGGCCCGAAACTGCCAACACATGGGAG 399
Query 566 CCTTTAGAGAATCTCCAGTCTATTGCTGATGTTATAGATGCCTTTGAGGGAAGTTTGAAG 625
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 400 CCTTTAGAGAATCTCCAGTCTATTGCTGATGTTATAGATGCATTTGAAGGAAGTTTGAAG 459
Query 626 CCAGGAAAGCCTGGTAGGAAACGGAAGCGCAAATATGCAGGTCCTCATTCTCAGATGAAG 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 CCAGGAAAGCCTGGTAGGAAACGGAAGCGCAAATATGCAGGTCCTCATTCTCAGATGAAG 519
Query 686 AAGAAGCAACGTTTAACATCTACATCACATGATGCTACTGAGAAATCTGACTCTTCTACG 745
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 520 AAGAAACAACGTTTAACATCTACATCACATGATGCTGCTGAGAAATCTGACTCTTCTACG 579
Query 746 TCTCTCAACAACTCTAGCCTTCCTGACATTCCTGATCCACTAGACCTAAGCGGTTCGAGT 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TCTCTCAACAACTCTAGCCTTCCTGACATTCCTGATCCACTAGACCTAAGCGGTTCGAGT 639
Query 806 CTATTAAATA-GAGATGTGGAAGCG-AAGAATGCTTATGTATCCAACCAAGTTGAAGCCA 863
||| |||| | |||||| ||||| | |||||||||||||||||||||||||||||||| |
Sbjct 640 CTACTAAA-AGGAGATGGGGAAG-GTAAGAATGCTTATGTATCCAACCAAGTTGAAGCTA 697
Query 864 ACAGTGGGAGTGTTGGGATGGCCCGACAAGTTCGTTTGATTGACA-ATGAGAAAGAATAT 922
| || |||||||||||||||| ||||||| ||||||| ||||| | ||||||||||||||
Sbjct 698 ATAGCGGGAGTGTTGGGATGGTCCGACAACTTCGTTTAATTGA-AGATGAGAAAGAATAT 756
Query 923 GATCCAACACTTAACGAGCTACGAGGACCAGTCAACAATAGTAACGGTGCAGGATGTTCT 982
||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||
Sbjct 757 GATCCAACACTTAACGAGCTAAGGGGACCAGTCAATAATGGTAACGGTGCAGGATGTTCT 816
Query 983 CAAGGAGGAGGCATTGGTTCTGAAGGTGATAATGTAAGACCCAATGGCCTTCTCAAGGTT 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 CAAGGAGGAGGCATTGGTTCTGAAGGTGATAATGTAAGACCCAATGGCCTTCTCAAGGTT 876
Query 1043 TATCCTAAGGAGCTTGATAAGAACAGTCGTTTCATAGGTGCTAAGCGGAGGAAGTCTGGT 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 TATCCTAAGGAGCTTGATAAGAACAGTCGTTTCATAGGTGCTAAGCGGAGGAAGTCTGGT 936
Query 1103 TCTGTGAAAAGATTCAAACAAGATGGATCCACAAGTAACAACCACACAGCACCTACAGAT 1162
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 937 TCTGTGAAAAGATTCAAACAAGATGGATCCACAAGTAACAACCACACAGCACCTGCAGAT 996
Query 1163 CAGAATCTGACACCAGATTTGACTACATTAGACTCTTTTGGTAGGATTGCAAGGATGGGG 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 CAGAATCTGACACCAGATTTGACTACATTAGACTCTTTTGGTAGGATTGCAAGGATGGGG 1056
Query 1223 AATGAATATCCTGGTGTGATGGAAAATTGTAATTTGTCTCAGAAAACCAAGATTGAGGAG 1282
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1057 AATGAATATCCTGGTGTGATGGAAAATAATAATTTGTCTCAGAAAACCAAGATTGAGGAG 1116
Query 1283 TTGGACATCACGAAGATACTTAAACCAATGAG-TTTTACAGCATCTGTATCAGACAATGT 1341
||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 1117 TTGGACATCACAAAGATACTTAAACCGATGAGCTTTT-CAGCATCTGTATCAGACAATGT 1175
Query 1342 CCAGGAAGTGTTGGTGACCTTTTTAGCGCTGAGGTCTGATGGGAAGGAAGC-ATTGGTGG 1400
|||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1176 CCAGGATGTGTTGGTGACCTTTTTAGCGCTGAGGTCTGATGGGAAGGAAGTGAT-GGTGG 1234
Query 1401 ACAACAGATTTCTCAAGGCTCACAATCCTCATCTCCTGATTGAATTCTATGAGCAACATC 1460
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1235 ACAACAGATTTCTCAAGGCTCACAATCCTCATCTGCTGATTGAATTCTATGAGCAACATC 1294
Query 1461 TCAAGTACAATCGAACGCCTTAA 1483
||||||||||||| |||||||||
Sbjct 1295 TCAAGTACAATCGCACGCCTTAA 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68181538550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5