BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17700.1
Length=2116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488635 jgi|Araly1|488635|fgenesh2_kg.6__1769__AT5G17700.1 2425 0.0
> Ahg488635 jgi|Araly1|488635|fgenesh2_kg.6__1769__AT5G17700.1
Length=1831
Score = 2425 bits (1313), Expect = 0.0
Identities = 1629/1773 (92%), Gaps = 55/1773 (3%)
Strand=Plus/Plus
Query 115 TCGGTTTCTCCGACTCTTTCCCCTTGAACCTAGCTTAACagagaaaatcaaagagagagg 174
||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct 23 TCGGTTTCTCCGACTCTTTCCACTTGAACCTAGCTTAAGAGAGAAAATCAAAGAGGGAGA 82
Query 175 aaaaatgagtggaggtggtggagaaatggaagagagaCTGTTAAATGGGTCAGAGACAGA 234
|||||||||| | | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 83 AAAAATGAGT--A-GAGGTGGAGAAATGGAAGAGAGACTGCTAAATGGGTCAGAGACAGA 139
Query 235 ACAAAGGAGAGAGAGTCTCTACTTGAGAAAAAAGATTTGGAGTGAAGTAAGGAAGATGTG 294
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 140 ACAAAGGAGAGAGAGTCTCTACCTGAGAAAAAAGATTTGGAGTGAAGTAAGGAAGATGTG 199
Query 295 GAGAATAGCTTTACCATCAACTTTGTTCAGAGTTATGTCGTTTGGATGCGTAGTGGTGGC 354
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 200 GAGAATTGCTTTACCATCAACTTTGTTCAGAGTGATGTCGTTTGGATGCGTGGTGGTGGC 259
Query 355 TCAAGCCTTCATTGGCCACTCCAGTGAAACGGGTCTCGCTGCTTATGCTCTCCTTCAAAG 414
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 260 TCAAGCCTTCATTGGCCACTCAAGTGAAACGGGTCTCGCTGCTTATGCTCTCCTTCAAAG 319
Query 415 CACTTTCATTCGCTTCATCTACGGTATTATGGCAGGTATGTCAAGTGCGACAGAGACGTT 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TACTTTCATTCGCTTCATCTACGGTATTATGGCAGGTATGTCAAGTGCGACAGAGACGTT 379
Query 475 ATGTGGACAAGCATACGGAGCAGAACAATACCACATGATGGGGATATACTTACAACGTTC 534
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 380 ATGTGGACAAGCATACGGAGCACAACAATACCGCATGATGGGGATATACTTACAACGTTC 439
Query 535 TTGGATAGTAGATACCTTTATTGCAACTCTCTTCGTCCCTTTCATCGTCTTAGCGGGTCC 594
|||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 440 TTGGATAGTAGACACCTTTATAGCCACTCTCTTCGTCCCTTTCATCGTCTTCGCGGGTCC 499
Query 595 CATTCTCCGGTTATTAGGCCAAAACGTTGTGATCTCCGAGACAGTAGACGAGATTTACCC 654
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 500 CATTCTTCGGTTATTAGGCCAAAACGTTGTGATCACCGAGACAGTAGACGAGATCTACCC 559
Query 655 ATGGGTCATTCCTTATCTCTACAGCATCGTGTTCACCATGACAATGCAAATGTACCTCCA 714
||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 560 ATGGGTCATCCCTTATCTCTACAGCCTCGTGTTCACTATGACAATGCAAATGTACCTCCA 619
Query 715 AGCGCAGATGAAAAACGCCATCATAGGCATTCTTTCGACCCTAGCCTTGGTCTTGGACAT 774
||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 620 AGCGCAGATGAGAAACGCCATCATTGGCATTCTCTCGACCCTAGCCTTGGTATTGGACAT 679
Query 775 TGCGGCCACGTGGTGGTGCGTAAGCGTGATGGGGATGGGGATCCATGGTGCGCTTCTAGG 834
||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 680 TGCGGCCACGTGGTGGTACGTGAGCGTGATGGGGATGGGGATCCATGGAGCGCTTCTAGG 739
Query 835 GCTTAATATAAGCTCATGGTCGGTGGCCATAGCCGAGTTTGTATATGTGTTTGGAGGGTG 894
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 740 GCTTAATATAAGCTCATGGTCGGTGGTGATAGCCGAGTTTGTATATGTGTTTGGAGGGTG 799
Query 895 GTGCCCGCATACTTGGACCGGCTTTAGCACTGCTGCTTTTCTTGATCTTATTCCCATGCT 954
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 800 GTGCCCGCATACTTGGACCGGCTTTAGCACTGCTGCTTTTGTTGATCTTATTCCCATGCT 859
Query 955 CAAGTTATCCATATCCTCCGGCTTCATGCTTTGCTTAGAGTACTGGTATATGAGCATCAT 1014
|||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 860 CAAGTTATCCATTTCATCCGGTTTCATGCTCTGCTTAGAGTACTGGTATATGAGCATCAT 919
Query 1015 TGTCTTGATGTCTGGATATGCAAAGGATGCGAATATCGCAATTTCCGCTTTCTCCATATG 1074
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 CGTCTTGATGTCTGGATATGCAAAGGATGCGAATATCGCAATTTCCGCTTTCTCCATATG 979
Query 1075 CCAATATATCTACTCATGGGAGATGAACATATGCTTTGGCTTGATGGGTGCAGCATGTGT 1134
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 980 CCAATATATCTACTCATGGGAGATGAACATTTGCTTTGGCTTGTTGGGTGCAGCATGTGT 1039
Query 1135 ACGAGTGGCGAATGAATTGGGAAAAGGCGATGCGGATGCGGTGAGATTCTCGATAAAAGT 1194
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1040 ACGAGTGGCGAATGAATTGGGAAAAGGCGATGCGGATGCTGTGAGATTCTCGATAAAAGT 1099
Query 1195 GGTGCTTGTGGTATCAGCGGTGATCGGTGTGATATGTTCCGCTCTTTGCCTAGCGTTTGG 1254
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 GGTACTTGTGGTCTCAGCGGTGATCGGTGTGATATGTTCCGCTCTTTGCCTAGCGTTTGG 1159
Query 1255 CGGTCAGATTTCGTATTTGTTCTCTGATAGCCAAGCAGTTTCGGATGCAGTAGCTGATCT 1314
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 1160 CGGTCAGATTTCGTATTTGTTCTCCGATAGCCCTGCAGTTTCGGATGCAGTCTCTGATCT 1219
Query 1315 CTCCATCGTCCTTAGCATATCTATACTCTTCAACATCATCCAGCCCATTCTATCTGGGGT 1374
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1220 CTCCCTCGTCCTTAGCATATCTATACTCTTCAACATCATCCAGCCCATTCTCTCTGGGGT 1279
Query 1375 AGCAATTGGAGCAGGGATGCAGAGTATGGTAGCATTAGTGAACTTAGCATCTTATTATGC 1434
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1280 AGCAATTGGAGCAGGGATGCAGAGTATGGTAGCATTTGTGAACTTAGCATCATATTATGC 1339
Query 1435 AATTGGTGTTCCTTTAGGTGTCCTCCTTGTTTACGTTTTCAATTTTGGGATTAAGGGACT 1494
||||||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1340 AATTGGTGTTCCTTTGGGTGTCCTCCTTATATACGTTTTCAATTTTGGTATTAAGGGACT 1399
Query 1495 CTGGTCCGGAATGTTGGCTGGAGTTGGTATCCAAACGTTGATATTGTGTTATGTTATTTA 1554
|||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1400 CTGGTCTGGAATGTTGGCTGGAGTTGGTGTACAAACGTTGATATTGTGTTATGTTATTTA 1459
Query 1555 CAAAACTGACTGGGAATTGGAGGTTAAGAAGACAAACGAGCGTATGAAAACGTGGACTCT 1614
|||||||||||||||||||||||||| |||||| || | || | | ||| | |
Sbjct 1460 CAAAACTGACTGGGAATTGGAGGTTATGAAGAC-AA--A-CG-A-G----CGT--A-T-G 1505
Query 1615 AAATTTACCTGCTGTACAATCGACTACTATCTCCACAAGAGATGAAGAGAGAAAGTGAAC 1674
||| | | | || || | ||| || | | ||||||||||||||| |||||||
Sbjct 1506 AAA---A-C-G-TGGAC--T---CTA-AAT-T-TA-AAGAGATGAAGAGAGGAAGTGAAT 1550
Query 1675 ATACAACTAAGTTAATTTAAAGAAATCTTTTAAGAAATTCTTTATaaa-a--aaaGAAAG 1731
|||| || | ||||| ||||| | |||||||||| | |||| ||| | ||| || |
Sbjct 1551 GCACAAAGAAATCAATTTTAAGAAGTATTTTAAGAAAAT-TTTA-AAATATTAAA-AATG 1607
Query 1732 AATAATTTATGTTGTATTGTGGTTGTGTTTTGCATTCCCTAAGAATGAAGTATCGGTGTT 1791
||||||||||| | || ||| | || || || | |||| |||| |||||
Sbjct 1608 AATAATTTATG--G----GT-GTTATATTGTG-GTT---T----TTGAACTATCAGTGTT 1652
Query 1792 GAGATTGCATTATTAGGTTAATGCAACTCTCATAACTTTG-AAAAAGGTTAAGAAGGATG 1850
|||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 1653 GAGATTGCATTATTAGGTTAATGCAACTCTGATAACTTTGAAAAAAAGTTAAGAAGGATG 1712
Query 1851 AACTTTTTCTTTTA-TCAGAGAAAAAGGTTGTT 1882
|||||||||||||| || ||||||||||| |||
Sbjct 1713 AACTTTTTCTTTTAGTCGGAGAAAAAGGTCGTT 1745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79608612050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5