BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17710.2
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941283 jgi|Araly1|941283|scaffold_601827.1 1626 0.0
> Ahg941283 jgi|Araly1|941283|scaffold_601827.1
Length=1024
Score = 1626 bits (880), Expect = 0.0
Identities = 977/1025 (95%), Gaps = 2/1025 (0%)
Strand=Plus/Plus
Query 67 cttctctttctccgaactcttcGATGGCCGGTCTACTCAAAACGCCGTCTTTACATCTCA 126
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTCTTTCGCCGAACTCTTCAATGGCCGGTCTACTCAAAACGCCGTCTTTACATCTCA 60
Query 127 CACCAACTCTTCTTCATGCTCCTTCTGTACCCTTTAAGCCCTTTTGCGTAT-CTTTCGCC 185
||||||| |||||||||||||| ||||||||||||||||||||||| || | |||| |||
Sbjct 61 CACCAACGCTTCTTCATGCTCCCTCTGTACCCTTTAAGCCCTTTTGTGTCTCCTTT-GCC 119
Query 186 GGAGGAAGAAACGTTAGCGTCTCACTCTCTCGCCGAGCTTCTCTCCGGTCTGTCTCTAGC 245
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 GGAGGAAGAAATACCAGCGTCTCACTCTCACGCCGAGCTTCTCTCCGGTCTGTCTCTAGC 179
Query 246 GGCTATCCTCTCCGCTTACTAAACCTCGTACCCTTTGCTTCGGGAGAAGCTGAGACGACG 305
||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGCTATCCTCTCCGGTTATTGAACCTCGTACCCTTTGCTTCGGGAGAAGCTGAGACGACG 239
Query 306 GAGACGGAGGTGGAATCGAACGAACCCGAAGTTCAGGAGACGGATGGTGCTGTTGATGTC 365
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 GAGACGGAGGTAGAATCGAACGAACCCGAAGTTCAGGAGACGGATGGTGCTATTGATGTG 299
Query 366 GAGAATGAAAATGCCAGTGCTGAGGAGGGTGAAGCTGAGGAAGAAGAAGCAGCTGTTATC 425
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 300 GAGAATGAAAATGCCGGTGCTAAGGAGGGTGAAGCTGAGGAAGAAGAAGCAGCTGTTGTC 359
Query 426 ACAGCGTTGCTGAAATCCTATAAAGAAGCTTTAGCAGACAACAACGAGGGGAAGATTGCT 485
||||| ||||| || || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 ACAGCATTGCTCAATTCATATAAAGAAGCTTTAGCAGACAACAACGAGGGGAAAATTGCT 419
Query 486 GAGATAGAAGCATCTTTAAAGTCCATAGAAGATGAAAAATTTCTGCTTGCGGATAAAGTA 545
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 GAGATAGAAGCATCTTTAAAGTCCATAGAAGATGAAAAATTTCTGCTTGAGGATAAAGTA 479
Query 546 GCGTCTTTATCCAATGAGTTATCGGTGGAGAGGGATCGGCTTATAAGAATCAGTGCAGAT 605
|| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 480 GCTTCTTTATCCAATGAATTATCGGTGGAGAGGGATCGGCTCATTAGAATCAGTGCAGAT 539
Query 606 TTCGACAACTTCAGGAAGAGGACTGAGAGGGAAAGGCTAAACCTTGTTTCAAATGCTCAA 665
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 540 TTCGACAACTTCAGGAAGAGGACAGAGAGGGAAAGGCTAAACCTTGTTTCAAATGCTCAA 599
Query 666 GGAGAGGTTGTAGAGAATCTTTTGGCTGTTTTGGATAATTTCGAGAGAGCTAAATCCCAA 725
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 GGAGAGGTTGTAGAGAATCTTTTGGCTGTTTTGGATAATTTCGAAAGAGCTAAATCCCAA 659
Query 726 ATTAAGGTGGAGACTGAGGGAGAAGAGAAAGTCACTAATAGCTATCAGAGCATATACAAA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATTAAGGTGGAGACTGAGGGAGAAGAGAAAGTCACTAATAGCTATCAGAGCATATACAAA 719
Query 786 CAGTTTGTAGAAATTCTGGGATCACTTGGTGTTATCCATGTGGAGACAGTCGGCAAGCAG 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAGTTTGTAGAAATTCTGGGATCACTTGGTGTTATCCATGTGGAGACAGTCGGCAAGCAG 779
Query 846 TTTGATCCAATGCTACATGAGGCAATAATGAGAGAAGACTCTGCGGAATACGAAGAGGGT 905
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 TTTGATCCAATGCTACACGAGGCAATAATGAGAGAAGATTCTGCGGAATACGAAGAGGGT 839
Query 906 ATAGTACTAGAAGAATACAGGAAAGGTTTCTTGCTAGGTGAAAGGCTTTTACGTCCTTCA 965
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 ATAGTACTAGAAGAATACAGGAAAGGTTTCTTGCTAGGCGAAAGGCTTTTACGTCCTTCA 899
Query 966 ATGGTGAAAGTATCAGCTGGACCTGGACCAGAAAAGCCCCTTGAAGCTGAAGGAGAAGAA 1025
||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 900 ATGGTGAAAGTATCAGCTGGACCCGGACCAGAAAAGCCTCGTGAAGCTGAAGGAGAAGAA 959
Query 1026 GCCACAGCACAAGGAAGCGCAGAAGAAGAATCATCTTCATCTTGAAATTGAAGATGATCA 1085
|| || |||||||||||| ||||||||||| | |||||||||||| ||||||||| ||||
Sbjct 960 GCAACTGCACAAGGAAGCTCAGAAGAAGAAGCTTCTTCATCTTGATATTGAAGATAATCA 1019
Query 1086 AGACT 1090
|||||
Sbjct 1020 AGACT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48111121254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5