BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17720.1
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326200 jgi|Araly1|326200|fgenesh1_pm.C_scaffold_6001420 741 0.0
> Ahg326200 jgi|Araly1|326200|fgenesh1_pm.C_scaffold_6001420
Length=1155
Score = 741 bits (401), Expect = 0.0
Identities = 464/495 (94%), Gaps = 2/495 (0%)
Strand=Plus/Plus
Query 1 ATGATTACTTCGAGTTTCTCAGAAAAATGTACATCAGTTATTAACGGAGCTCCAAGTTGG 60
|||||| |||||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 1 ATGATTGCTTCGAGTTTCTCAGAAAAATGTATATCAGTCATCAACGGAGCTCCAAGTTGG 60
Query 61 GCGGTCTTCTTTC-TTTTTGACCTCCTCGACTATTTTCTTTGTATCGTTTTCAGATTCCT 119
|| |||||| ||| ||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 61 GCCGTCTTC-TTCTTTTTTTACCTCCTCGACGCTTTTCTTTGCATCGTTTTCAGATTCCT 119
Query 120 CGACGAAGTTATGGAAGAAAAATCAGAGTCTTGTCATTGTAATAACCCTCGAGAGAAAAC 179
||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||
Sbjct 120 CGACGAAGTTATGGAAGAAAAATTAGAGTCTTGTCACTGTAAAAACCCTCAAGAGAAAAC 179
Query 180 ACATTTTGCAGAATACGAGTTCCTTTCGGAGACTCTCTATCGGAGGAGAAACGTTTTCCG 239
| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGATTTTGCAGGGTACGAGTTTCTTTCGGAGACTCTCTATCGGAGGAGAAACGTTTTCCG 239
Query 240 ACAGGCCGGTTTTCTCCGGTTTGCGAATAAACTCCCTGAGATAACCAAGAAAATAGGTAT 299
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 240 ACAGGCCGGTTTTCTCCGGTTTGCGAAAAAACTCCCTGAGATAACCAAGAAAATTGGTAT 299
Query 300 CGTTACTTTCCTGAGAAAATTTCTTTTTCCTCATACAATGAACAAAGTCTCTCATGAGGT 359
|||||| |||||||||||||| |||||| |||| || ||||| |||||||||||||||||
Sbjct 300 CGTTACATTCCTGAGAAAATTCCTTTTTTCTCAGACGATGAAGAAAGTCTCTCATGAGGT 359
Query 360 TGCAAACCGGTGGTCTGATTGTGGTTGCAAGACTTGTGTTTCTTGGATCAACACTGATAA 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 360 TGCAAACCGGTGGTCTGATTGTGGTTGCAAGACTTGTGTTTCTTGGACCAACAGTGATAA 419
Query 420 ACTTAACGTAATCGTCAAGCAACCTTCAATATCAGATTTGTCGATAAGCAACAAACCGGT 479
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 ACTTAACGTGATCGTCAAGCAACCTTCAATATCAGATTTGTTGATAAGCAACAAACCGGT 479
Query 480 AGAGAACGTTATTTT 494
|||||||||||||||
Sbjct 480 AGAGAACGTTATTTT 494
Score = 446 bits (241), Expect = 2e-124
Identities = 261/271 (96%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 1055 ATAGCATGCACAATGTAATATGCGGAGGAGCGAAATTCACGGATAAACACCTTGAAACTT 1114
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 ATAGCATGCACAATGTGATATGCGGAGGAGCGAAATTCACGGATAAACACCTTGAAACTT 907
Query 1115 TGATAAAATCCGGTGTTAAAATCAATGTGATGCAAGGGGATAAAGATGTTGTTGTTCCTA 1174
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 908 TGATAAAATCCGGTGTTAAAATCAATGTGGTGCAAGGGGATAAAGATGTTGTTGTTCCTA 967
Query 1175 TTGATTGTCTATCGAACATGAAAGGAAAGTTCCCTGCGGTTGAAGTCGAGGTTATCGCTG 1234
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 968 TTGATTGTCTATGGAACATGAAAGGGAAGTTCCCTGCGGTTGAAGTCGAGGTTATCGCCG 1027
Query 1235 GGACTGATCATAGTACGGTCATAATGAGTAGGAGAGAGGTCTTTGCTGCAAACCTTGTAA 1294
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1028 GAACTGATCATAGTACGGTCATAATGAGTAGGAGAGAGGTCTTTGTTGCAAGCCTTGTAA 1087
Query 1295 GTTTGTGGGCTACTTCCGAAAAGAAACAAAA 1325
||||||||||| ||||| |||||||||||||
Sbjct 1088 GTTTGTGGGCTTCTTCCCAAAAGAAACAAAA 1118
Score = 294 bits (159), Expect = 9e-79
Identities = 194/211 (92%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 570 AACTAACTACAGATTCTTTGCTATCGATCTTCTTGGATTTGGAGACAGCCCGAAACCAAG 629
|||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 516 AACTAACTACAGATTCTTTGCTGTCGATCTTCTCGGGTTTGGAGACAGCCCGAAACCAAG 575
Query 630 AGCCAGTCAGTATTCGTTGAAAGAACATGTCGAAATGATCGAAAAATCGGTTATTTTACC 689
||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 576 AGCCAGTCAATATTCGTTTAATGAACATGTCGAAATGATCGAGAAATCGGTTATTTTACC 635
Query 690 AAATAATTTGACTTCATTC-CATGTTGTCGCACACTCCATGGGATGCATCATTGGAATAG 748
|||||||||||||| || |||||||| ||||| ||||||||||| ||||||| |||||
Sbjct 636 AAATAATTTGACTTTTTTTTCATGTTGTAGCACATTCCATGGGATGTATCATTGCAATAG 695
Query 749 CCTTAGCTGCAAAATTCTCCGACAGCGTCAA 779
||||| |||||||||||||||||| ||||||
Sbjct 696 CCTTAACTGCAAAATTCTCCGACAACGTCAA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5